View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_22 (Length: 455)
Name: NF1643_high_22
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_22 |
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| [»] scaffold0153 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 447
Target Start/End: Original strand, 14604115 - 14604545
Alignment:
| Q |
19 |
attttctacactattaacttctcatcccacacaatcaattagatttaatgccggttacttactttccattaacttctcacctcacagaattgataatagc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
14604115 |
attttctacactattaacttctcatcccacacaatcgattagatttaatgccggttacttactttccattaacttctcacctcacagaattctaaataac |
14604214 |
T |
|
| Q |
119 |
tgcttccccatttcaattacaaaaacacatgatgctacatacaatgatacaatcatcaattctaccannnnnnncatttacaatttctatctattgttcc |
218 |
Q |
| |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
14604215 |
tgcttccccatttcaattacaaaaacacatgttcctacatacaatgatacaatcatcaattctaccatttttttcatttacaatttctatgtattgttcc |
14604314 |
T |
|
| Q |
219 |
tatcaac-nnnnnnnnntctctatccattgttatcttatctctccattaattcatttcattgtcaactatttttactc-nnnnnnnntaggacatttcat |
316 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
14604315 |
tatcaacaaaaaaaaaatctctatccattgttatcttatctctccattaattcatttcattgtcaaccatttttactcaaaaaaaaaaaggacatttcat |
14604414 |
T |
|
| Q |
317 |
catggaatgatgttgttaacttacggtaaatcattcttacttcctacaattgtaattgtatttacatgactttatgatctctttctttcctgtcaaattt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
14604415 |
catggaatgatgttgttaacttacggtaaatgattcttacttcctacaattgtaattgtatgtacatgactttattatctctttctttcctgtcaaattt |
14604514 |
T |
|
| Q |
417 |
ccaccactttggtactcttttatttcttctc |
447 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
14604515 |
ccaccactttggtactcttttatttcttctc |
14604545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 53 - 447
Target Start/End: Complemental strand, 32618788 - 32618377
Alignment:
| Q |
53 |
tcaattagatttaatgccggttacttactttccattaacttctcacctcacagaattgataatagctgcttccccatttcaattacaaaaacacatgatg |
152 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| |||||||||||||||| ||||| || |
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| T |
32618788 |
tcaattagatttaatttcggttacttactttccattaacttctcacctcacagaattgttaataactacttccctatttcaattacaaaaatacatgttg |
32618689 |
T |
|
| Q |
153 |
ctacatacaatgatacaatcatcaattctaccannnnnnncatttacaatttctatctattgttcctatcaacnnnnnnnnn---tctctatccattgtt |
249 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32618688 |
ctacacacaatgatacaatcatcaattctaccatttttttcatttacaatttctatctattgttcctatcaaaaaaaataaaaaatctctatccattgtt |
32618589 |
T |
|
| Q |
250 |
atcttatctctccattaattcatttcatt---------gtcaactatttttactcnnnnnnnn-----taggacatttcatcatggaatgatgttgttaa |
335 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||| ||| |||||||||||||||||||||||||| | |
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| T |
32618588 |
atcttatctctccattaattcatttcattcatttcactgtcaaccatttttactcaaaaaaaaaaaattagaacatttcatcatggaatgatgttgttga |
32618489 |
T |
|
| Q |
336 |
cttacggtaaatcattcttacttcctacaattgtaattgtatttacatgactttatgatctctttctttcctgtcaaatttccaccactttggtactctt |
435 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32618488 |
cttacggtaaatcattcttactttctacaattgtaattgtatgtacatgactttattatctctttctttcctgtcaaatttccaccactttggtactctt |
32618389 |
T |
|
| Q |
436 |
ttatttcttctc |
447 |
Q |
| |
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|||||||||||| |
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| T |
32618388 |
ttatttcttctc |
32618377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 235 - 370
Target Start/End: Complemental strand, 24253500 - 24253364
Alignment:
| Q |
235 |
tctctatccattgttat-cttatctctccattaattcatttcattgtcaactatttttactcnnnnnnnntaggacatttcatcatggaatgatgttgtt |
333 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
24253500 |
tctctacccattgttattcttatctctccattaattcatttcatggtctactatttttactcaaaaaaaataggacatttcatcatggaataatgttgtc |
24253401 |
T |
|
| Q |
334 |
aacttacggtaaatcattcttacttcctacaattgta |
370 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||| |
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| T |
24253400 |
aacttacattaaatcattcttacttcctagaattgta |
24253364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 22774734 - 22774637
Alignment:
| Q |
304 |
taggacatttcatcatggaatgatgttgttaacttacggtaaatcattcttacttcctacaattgtaattgtatttacatgactttatgatctctttctt |
403 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| | ||||||||||| |
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| T |
22774734 |
taggacatttcttcatggaatgaatttgttaacttggggtaaatcattcttacttcctacaat------tgtatgtacatgactttgttatctctttctt |
22774641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 24253931 - 24253845
Alignment:
| Q |
26 |
acactattaacttctcatcccacacaatcaattagattt-aatgccggttacttactttccattaacttctcacctcacagaattga |
111 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||| ||| ||||| ||| |||||||| | ||||||||||||||| ||| |||||| |
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| T |
24253931 |
acactattatcttcttatcatacacaatcaattagtttttaatgctggtaacttacttccaattaacttctcaccttacacaattga |
24253845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 25897341 - 25897475
Alignment:
| Q |
235 |
tctctatccattgttat-cttatctctccattaattcatttcattgtcaactatttttactcnnnnnnnntaggacatttcatcatggaatgatgttgtt |
333 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||| ||||| ||||||| |
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| T |
25897341 |
tctctatccattgttattcttatctctccattaattcatttcatgctcaaccatttttactcaaaaaaa-taggacatttcatca-ggaataatgttgtc |
25897438 |
T |
|
| Q |
334 |
aacttacggtaaatcattcttacttcctacaattgta |
370 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| |
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| T |
25897439 |
aacttacagtaaatcattcgtacttcctacaattgta |
25897475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 25889837 - 25889927
Alignment:
| Q |
26 |
acactattaacttctcatcccacacaatcaattagattt-aatgccggttacttactttccattaacttctcacctcacagaattgataat |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||| || |||||||||||||| |||||||||||||||||| || ||||| |||| |
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|
| T |
25889837 |
acactattaacttctcatcacacacaatcaattaatttttaaccccggttacttacttcccattaacttctcacctcgcacaattgttaat |
25889927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 51271238 - 51271141
Alignment:
| Q |
304 |
taggacatttcatcatggaatgatgttgttaacttacggtaaatcattcttacttcctacaattgtaattgtatttacatgactttatgatctctttctt |
403 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| | ||||||||||| |
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|
| T |
51271238 |
taggacatttcttcatggaatgaagttgttaacttggggtaaatcattcttacttcctacaat------tgtatgtacatgactttgttatctctttctt |
51271145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 373
Target Start/End: Complemental strand, 22157676 - 22157618
Alignment:
| Q |
316 |
tcatggaatgatgttgttaacttacggtaaatcatt-cttacttcctacaattgtaatt |
373 |
Q |
| |
|
||||||||||| |||| | ||||||||||||||||| |||||||| |||||| |||||| |
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|
| T |
22157676 |
tcatggaatgacgttgctcacttacggtaaatcattccttacttcttacaatagtaatt |
22157618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 35928 - 36025
Alignment:
| Q |
304 |
taggacatttcatcatggaatgatgttgttaacttacggtaaatcattcttacttcctacaattgtaattgtatttacatgactttatgatctctttctt |
403 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| | ||||||||||| |
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|
| T |
35928 |
taggacatttcttcatggaatgaaattgttaacttggggtaaatcattcttacttcctac------aattgtatgtacatgactttgttatctctttctt |
36021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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