View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_23 (Length: 445)
Name: NF1643_high_23
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 11 - 430
Target Start/End: Complemental strand, 31438018 - 31437599
Alignment:
| Q |
11 |
atgaaaaaagagtagtaattttattgaacaagctcaccttgttcacatcatgttgatttaaacggctattcttatctccataagcattgatcacatcact |
110 |
Q |
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| T |
31438018 |
atgaaaaaagagtagtaattttattgaacaagctcaccttgttcacatcatgttgatttaaacggctattcttatctccataagcattgatcacatcact |
31437919 |
T |
|
| Q |
111 |
aagaatgtacatcatgagaggattctgcagaccatcaccaagacttccaagagtcccgaagaacatcaacaatttatcaaatccatctgcgtaacgaaac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
31437918 |
aagaatgtacatcatgagaggattctgcagaccatcaccaagacttccaagagtcccgaagaacatcaacaatttatcgaatccatctgcataacgaaac |
31437819 |
T |
|
| Q |
211 |
atgctattgctccccattttccctatagactctcccttttggagagataccttttcttagaaaggttcactaagcttgatcaacaatctcagtacaaaaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31437818 |
atgctattgctccccattttccctatagactctcccttttggagagataccttttcttagaaaggttcactaagcttgatcaacaatctcagtacaaaaa |
31437719 |
T |
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| Q |
311 |
acaacttgaaaagacttatataaacttattaagatgctcttagacaagtaggaaaatcagcagccagcatgtgactcttactattgtctttttacaaaca |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31437718 |
acaacttgaaaagacttatataaacttattaagatgctcttagacaagtaggaaaatcagcagccagcatgtgactcttactattgtctttttacaaaca |
31437619 |
T |
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| Q |
411 |
aagccgttctcaatatatat |
430 |
Q |
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|||||||||||||||||||| |
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| T |
31437618 |
aagccgttctcaatatatat |
31437599 |
T |
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