View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_high_24 (Length: 444)

Name: NF1643_high_24
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_high_24
NF1643_high_24
[»] chr6 (40 HSPs)
chr6 (24-246)||(27726036-27726274)
chr6 (32-246)||(27533088-27533322)
chr6 (42-246)||(27707117-27707341)
chr6 (24-193)||(27594511-27594696)
chr6 (37-246)||(27692356-27692586)
chr6 (25-205)||(27614019-27614218)
chr6 (322-427)||(27703375-27703480)
chr6 (352-434)||(27682501-27682583)
chr6 (244-309)||(34255454-34255519)
chr6 (372-434)||(27715092-27715154)
chr6 (244-304)||(34255591-34255651)
chr6 (246-304)||(29934616-29934674)
chr6 (246-304)||(34255525-34255583)
chr6 (244-309)||(29934545-29934610)
chr6 (247-304)||(34255657-34255714)
chr6 (244-304)||(26726293-26726353)
chr6 (246-302)||(28145145-28145201)
chr6 (246-305)||(26620446-26620505)
chr6 (246-305)||(26726425-26726484)
chr6 (318-372)||(26059489-26059543)
chr6 (318-372)||(26079459-26079513)
chr6 (244-306)||(28145277-28145339)
chr6 (244-305)||(5250007-5250068)
chr6 (244-304)||(26620380-26620440)
chr6 (244-304)||(26726359-26726419)
chr6 (246-306)||(28145212-28145272)
chr6 (244-306)||(26620314-26620374)
chr6 (244-306)||(26726227-26726287)
chr6 (246-305)||(28145078-28145137)
chr6 (336-420)||(27078974-27079057)
chr6 (246-305)||(6406594-6406653)
chr6 (246-305)||(31113150-31113209)
chr6 (246-306)||(5249939-5249999)
chr6 (247-306)||(5250075-5250134)
chr6 (332-371)||(26852258-26852297)
chr6 (263-306)||(33296078-33296121)
chr6 (246-305)||(6406525-6406586)
chr6 (24-68)||(26801273-26801317)
chr6 (100-142)||(26801234-26801276)
chr6 (262-296)||(31113227-31113261)
[»] scaffold0349 (2 HSPs)
scaffold0349 (24-246)||(4614-4853)
scaffold0349 (372-434)||(16790-16852)
[»] chr8 (24 HSPs)
chr8 (340-434)||(29270364-29270458)
chr8 (244-304)||(5557817-5557877)
chr8 (247-304)||(5557754-5557811)
chr8 (246-309)||(5558018-5558081)
chr8 (246-304)||(5557885-5557943)
chr8 (246-304)||(5557951-5558010)
chr8 (246-305)||(25336666-25336725)
chr8 (247-304)||(5557688-5557745)
chr8 (247-296)||(25336472-25336521)
chr8 (246-306)||(3165864-3165924)
chr8 (244-300)||(20810339-20810395)
chr8 (246-305)||(3165998-3166057)
chr8 (246-305)||(3166065-3166124)
chr8 (246-297)||(20810409-20810460)
chr8 (246-305)||(25336599-25336658)
chr8 (246-304)||(26082099-26082157)
chr8 (246-297)||(3165806-3165857)
chr8 (266-305)||(25336552-25336591)
chr8 (252-299)||(26082037-26082084)
chr8 (24-91)||(29262782-29262846)
chr8 (246-306)||(3165931-3165990)
chr8 (262-292)||(21542084-21542114)
chr8 (262-298)||(4844047-4844083)
chr8 (262-298)||(21542145-21542181)
[»] chr7 (33 HSPs)
chr7 (246-309)||(42785899-42785962)
chr7 (244-305)||(4341276-4341337)
chr7 (244-304)||(48477942-48478002)
chr7 (244-304)||(48478270-48478330)
chr7 (246-309)||(48478338-48478401)
chr7 (247-304)||(48478207-48478264)
chr7 (244-304)||(48478008-48478068)
chr7 (244-304)||(48478074-48478134)
chr7 (246-304)||(4341212-4341270)
chr7 (244-306)||(4341409-4341471)
chr7 (244-304)||(4341343-4341403)
chr7 (247-306)||(3078570-3078629)
chr7 (246-304)||(42785970-42786028)
chr7 (247-300)||(34456334-34456387)
chr7 (247-299)||(34456401-34456453)
chr7 (246-305)||(21958553-21958612)
chr7 (246-305)||(34456462-34456521)
chr7 (246-300)||(21958491-21958545)
chr7 (244-304)||(48478140-48478198)
chr7 (246-306)||(3081329-3081388)
chr7 (246-305)||(15695443-15695502)
chr7 (246-305)||(15702423-15702482)
chr7 (246-302)||(21958422-21958478)
chr7 (244-306)||(3078503-3078565)
chr7 (248-306)||(3078719-3078777)
chr7 (248-306)||(3081124-3081182)
chr7 (246-300)||(33615957-33616011)
chr7 (262-306)||(3078650-3078694)
chr7 (246-306)||(3081191-3081251)
chr7 (246-290)||(15695391-15695435)
chr7 (246-290)||(15702371-15702415)
chr7 (246-306)||(3081260-3081320)
chr7 (246-305)||(3081395-3081454)
[»] chr5 (6 HSPs)
chr5 (246-309)||(41528638-41528701)
chr5 (246-304)||(41528506-41528564)
chr5 (246-304)||(41528572-41528630)
chr5 (247-304)||(41528441-41528498)
chr5 (255-307)||(37368915-37368967)
chr5 (244-307)||(37368983-37369046)
[»] chr2 (14 HSPs)
chr2 (244-309)||(2743312-2743377)
chr2 (244-304)||(2743383-2743443)
chr2 (244-304)||(2743449-2743509)
chr2 (246-305)||(31314981-31315040)
chr2 (246-304)||(2743515-2743573)
chr2 (252-305)||(31347083-31347136)
chr2 (246-305)||(31346830-31346889)
chr2 (247-305)||(31315049-31315107)
chr2 (247-305)||(31315119-31315177)
chr2 (247-305)||(31315187-31315245)
chr2 (247-305)||(31346949-31347007)
chr2 (247-305)||(31347016-31347074)
chr2 (246-299)||(11951280-11951333)
chr2 (266-300)||(31346901-31346935)
[»] chr4 (34 HSPs)
chr4 (244-304)||(5599911-5599971)
chr4 (246-309)||(5599979-5600042)
chr4 (247-304)||(5599848-5599905)
chr4 (244-305)||(13713302-13713363)
chr4 (246-304)||(5909058-5909116)
chr4 (246-304)||(14190483-14190541)
chr4 (247-305)||(31663308-31663366)
chr4 (244-305)||(1506106-1506167)
chr4 (244-304)||(1506173-1506233)
chr4 (246-306)||(4852635-4852695)
chr4 (246-305)||(1505975-1506034)
chr4 (247-305)||(13713172-13713230)
chr4 (247-305)||(31663376-31663434)
chr4 (247-304)||(5599782-5599839)
chr4 (244-297)||(5909122-5909175)
chr4 (244-304)||(1506040-1506100)
chr4 (246-306)||(4852566-4852626)
chr4 (246-305)||(5578448-5578507)
chr4 (246-305)||(13713104-13713163)
chr4 (246-305)||(31663577-31663636)
chr4 (244-306)||(1506239-1506301)
chr4 (246-304)||(13702611-13702669)
chr4 (246-306)||(14190549-14190609)
chr4 (262-305)||(31663443-31663486)
chr4 (246-305)||(31663510-31663569)
chr4 (244-306)||(13713369-13713431)
chr4 (244-297)||(5578260-5578313)
chr4 (247-304)||(13713239-13713296)
chr4 (246-301)||(5578322-5578377)
chr4 (246-306)||(6735379-6735439)
chr4 (247-306)||(31663238-31663297)
chr4 (244-306)||(5578182-5578246)
chr4 (262-297)||(4852721-4852756)
chr4 (246-306)||(6735314-6735371)
[»] chr3 (30 HSPs)
chr3 (247-305)||(18111575-18111633)
chr3 (247-305)||(28034793-28034851)
chr3 (244-296)||(14521046-14521098)
chr3 (246-305)||(5835618-5835677)
chr3 (246-305)||(5938854-5938913)
chr3 (246-305)||(5938921-5938980)
chr3 (246-305)||(18111440-18111499)
chr3 (247-305)||(5938989-5939047)
chr3 (246-304)||(14521104-14521162)
chr3 (244-305)||(19384201-19384262)
chr3 (246-305)||(5938787-5938846)
chr3 (246-305)||(18111507-18111566)
chr3 (244-297)||(28034657-28034710)
chr3 (246-303)||(29897111-29897168)
chr3 (244-304)||(19384087-19384147)
chr3 (246-298)||(29897056-29897108)
chr3 (246-305)||(5938720-5938779)
chr3 (246-305)||(19441052-19441111)
chr3 (246-297)||(19441119-19441170)
chr3 (246-305)||(28034726-28034785)
chr3 (247-305)||(2746780-2746838)
chr3 (246-300)||(19479989-19480043)
chr3 (244-289)||(19384330-19384375)
chr3 (247-307)||(45227290-45227351)
chr3 (263-305)||(19384282-19384324)
chr3 (246-306)||(29897166-29897226)
chr3 (257-304)||(19384148-19384195)
chr3 (247-306)||(19480050-19480110)
chr3 (247-296)||(45227234-45227283)
chr3 (262-298)||(19480125-19480161)
[»] chr1 (19 HSPs)
chr1 (246-305)||(22207896-22207955)
chr1 (244-301)||(51844412-51844469)
chr1 (246-306)||(14114754-14114814)
chr1 (246-298)||(22208030-22208082)
chr1 (247-306)||(15088567-15088626)
chr1 (247-306)||(22207692-22207751)
chr1 (246-305)||(22207760-22207819)
chr1 (247-306)||(22207828-22207887)
chr1 (247-306)||(22211175-22211234)
chr1 (247-297)||(22208098-22208148)
chr1 (247-306)||(22207964-22208023)
chr1 (246-301)||(51844347-51844402)
chr1 (246-300)||(15088633-15088687)
chr1 (247-305)||(22207625-22207683)
chr1 (246-300)||(22211241-22211295)
chr1 (246-306)||(14114685-14114745)
chr1 (246-306)||(14114823-14114883)
chr1 (246-306)||(14114894-14114954)
chr1 (244-298)||(51844479-51844533)
[»] scaffold0046 (3 HSPs)
scaffold0046 (246-297)||(90477-90528)
scaffold0046 (246-303)||(90544-90601)
scaffold0046 (246-297)||(90613-90663)
[»] scaffold0060 (2 HSPs)
scaffold0060 (246-298)||(40001-40053)
scaffold0060 (247-297)||(39935-39985)
[»] scaffold0043 (3 HSPs)
scaffold0043 (246-306)||(69695-69755)
scaffold0043 (246-305)||(69830-69889)
scaffold0043 (246-297)||(69771-69822)
[»] scaffold0927 (3 HSPs)
scaffold0927 (246-297)||(3626-3677)
scaffold0927 (247-305)||(3560-3618)
scaffold0927 (246-290)||(3693-3737)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 3e-86; HSPs: 40)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 24 - 246
Target Start/End: Original strand, 27726036 - 27726274
Alignment:
Q  24 aaataaacaaaatgaagctccattacaccatcaagatacattttggttacttctaaacaaagaaaaacgaggaaaatttgcatttcaaatatcatcaaat 123  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  27726036 aaataaacaaaatgaagctccattacaccatcaagatgcattttggttacttctaaccaaagaaaaacaaggaaaatttgcatttcaaatatcatcaaat 27726135  T
Q  124 gacatgttaattgagt----------------ctctgcttccaacagtagtagtatcaacaggacccggattccgtgcattaataaaagtccatagtttc 207  Q
    ||||||||||||||||                || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27726136 gacatgttaattgagtcttacatttgctaatactttgcttccaacagtagtagtatcaacaggacctggattccgtgcattaataaaagtccatagtttc 27726235  T
Q  208 aactttcatgcagttgttaatctcggccctttgtgatcg 246  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  27726236 aactttcatgcagttgttaatctcggccctttgttatcg 27726274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 32 - 246
Target Start/End: Original strand, 27533088 - 27533322
Alignment:
Q  32 aaaatgaagctccattacaccatcaagatacattttggttacttctaaacaaagaaaaacga---ggaaaatttgcatttcaaatatcatcaaatgacat 128  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |   ||||||||||||||||||||||||||||  |||||    
T  27533088 aaaaagaagctccattacaccatcaggatacattttggttacttctaaccaaagaaaaacaaaatggaaaatttgcatttcaaatatcatcaatagacat 27533187  T
Q  129 gttaattgagtctc-----------------tgcttccaacagtagtagtatcaacaggacccggattccgtgcattaataaaagtccatagtttcaact 211  Q
    ||||||||||||||                 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27533188 gttaattgagtctcacatttgatttaacttgtgcttccaacagtagtagtatcaacgggacccggattccgtgcattaataaaagtccatagtttcaact 27533287  T
Q  212 ttcatgcagttgttaatctcggccctttgtgatcg 246  Q
    |||||||||||||||||||||||||||||| ||||    
T  27533288 ttcatgcagttgttaatctcggccctttgttatcg 27533322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 27707117 - 27707341
Alignment:
Q  42 tccattacaccatcaagatacattttggttacttctaaacaaagaaaaacga---ggaaaatttgcatttcaaatatcatcaaatgacatgttaattgag 138  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||    
T  27707117 tccattacaccatcaggatacattttggttacttctaaccaaagaaaaacaaaaaggaaaatttgcatttcaaatatcatcaaatgacatgttaattgag 27707216  T
Q  139 tctc-----------------tgcttccaacagtagtagtatcaacaggacccggattccgtgcattaataaaagtccatagtttcaactttcatgcagt 221  Q
    ||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27707217 tctcacatttgatttaacttgtgcttccaacagtagtagtatcaacaggacccggattccgtgcattaataaaagtccatagtttcaactttcatgcaat 27707316  T
Q  222 tgttaatctcggccctttgtgatcg 246  Q
     ||||| |||  |||||||||||||    
T  27707317 cgttaaactccaccctttgtgatcg 27707341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 27594511 - 27594696
Alignment:
Q  24 aaataaacaaaatgaagctccattacaccatcaagatacattttggttacttctaaacaaagaaaaacgaggaaaatttgcatttcaaatatcatcaaat 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||    
T  27594511 aaataaacaaaatgaagctccattacaccatcaagatacattttggttacttctaaccaaagaaaaataaggaaaatttgcatttcaaatatcatcaaat 27594610  T
Q  124 gacatgttaattgagtctc----------------tgcttccaacagtagtagtatcaacaggacccggattccgtgcattaataa 193  Q
    |||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27594611 gacatgttaattgagtctcacatttgctttaactttgcttccaacagtagtagtatcaacaggacccggattccgtgcattaataa 27594696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 37 - 246
Target Start/End: Original strand, 27692356 - 27692586
Alignment:
Q  37 gaagctccattacaccatcaagatacattttggttacttctaaacaaagaaaaacga---ggaaaattt-gcatttcaaatatcatcaaatgacatgtta 132  Q
    |||||||||||||||||| | |||||||||||||||||||||| ||||||||||| |   ||||||||| ||||||||||||||||||||||||||||||    
T  27692356 gaagctccattacaccatgaggatacattttggttacttctaaccaaagaaaaacaaaaaggaaaattttgcatttcaaatatcatcaaatgacatgtta 27692455  T
Q  133 attgagtctc-----------------tgcttccaacagtagtagtatcaacaggacccggattccgtgcattaataaaagtccatagtttcaactttca 215  Q
    ||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27692456 attgagtctcacatttgatttaacttgtgcttccaacagtagtagtatcaacaggacccggattccgtgcattaataaaagtccatagtttcaactttca 27692555  T
Q  216 tgcagttgttaatctcggccctttgtgatcg 246  Q
    |||| | ||||| |||  |||||||||||||    
T  27692556 tgcaatcgttaaactccaccctttgtgatcg 27692586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 27614019 - 27614218
Alignment:
Q  25 aataaacaaaatgaagctccattacaccatcaagatacattttggttacttctaaacaaagaaaaac--gaggaaaatttgcatttcaaatatcatcaaa 122  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||   ||| |||||| |||||||||||||||||||    
T  27614019 aataaacaaaatgaagcttcattacaccatcaagatacattttggttacttctaaccaaagaaaaacaaaaggcaaatttacatttcaaatatcatcaaa 27614118  T
Q  123 tgacatgttaattgagtctc-----------------tgcttccaacagtagtagtatcaacaggacccggattccgtgcattaataaaagtccatagtt 205  Q
    ||||||||||||||||||||                 ||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  27614119 tgacatgttaattgagtctcacatttgctttaacttgtgcttccaacactagtagtatccgcaggacccggattccgtgcattaataaaagtccatagtt 27614218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 322 - 427
Target Start/End: Original strand, 27703375 - 27703480
Alignment:
Q  322 cgtgttgctttttgatgcacctagactaaggaatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcc 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||    
T  27703375 cgtgttgctttttgatgcacctagactaaggaatgtaccccatgtctttttttgttcctctttctttaaatcctgttgttgcaatgaagcattgatatcc 27703474  T
Q  422 tcctct 427  Q
    ||||||    
T  27703475 tcctct 27703480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 352 - 434
Target Start/End: Complemental strand, 27682583 - 27682501
Alignment:
Q  352 gaatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctg 434  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  27682583 gaatgtaccccatgtctttctttgttcctctttcatcaattcctgttgttgcaatgaagcattgatatcctcctctgtctctg 27682501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 34255519 - 34255454
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34255519 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagattttatc 34255454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 372 - 434
Target Start/End: Original strand, 27715092 - 27715154
Alignment:
Q  372 tttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctg 434  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27715092 tttgttcctctttcgtcaaatcctgctgttgcaatgaagcattgatatcctcctctgtctctg 27715154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 34255651 - 34255591
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34255651 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacagagttt 34255591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 29934674 - 29934616
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29934674 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 29934616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 34255583 - 34255525
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34255583 gttactttgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 34255525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 29934610 - 29934545
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 309  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  29934610 tcgttactatgagcggttcctcataggctacattatctcttcgttgtagcaaatggagattttatc 29934545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 247 - 304
Target Start/End: Complemental strand, 34255714 - 34255657
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34255714 ttactatgagtcgttcctcataggctacattatctcttcgttgtagcaaacggagttt 34255657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 26726353 - 26726293
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  26726353 tcgttactatgagccgtacctcataagctacattatctcttcgttgtagcaaacggagttt 26726293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 28145145 - 28145201
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagt 302  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28145145 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagt 28145201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 26620505 - 26620446
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26620505 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 26620446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 26726484 - 26726425
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26726484 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 26726425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 318 - 372
Target Start/End: Complemental strand, 26059543 - 26059489
Alignment:
Q  318 catccgtgttgctttttgatgcacctagactaaggaatgtaccccatgtctttct 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26059543 catccgtgttgctttttgatgcacctagactaaggaatgtaccccaagtctttct 26059489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 318 - 372
Target Start/End: Complemental strand, 26079513 - 26079459
Alignment:
Q  318 catccgtgttgctttttgatgcacctagactaaggaatgtaccccatgtctttct 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26079513 catccgtgttgctttttgatgcacctagactaaggaatgtaccccaagtctttct 26079459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 28145277 - 28145339
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||    
T  28145277 tcgttactatgagccgtacctcatagactacattatctcttcgttgtagcaaacggagatttt 28145339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 5250068 - 5250007
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||    
T  5250068 tcgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagtttt 5250007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 26620440 - 26620380
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  26620440 tcgttactataagccgtacctcataggctacattatctcttcgttgtagcaaacgaagttt 26620380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 26726419 - 26726359
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  26726419 tcgttactataagccgtacctcataggctacattatctcttcgttgtagcaaacgaagttt 26726359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 28145212 - 28145272
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||    
T  28145212 gttactatgagccgtacatcataggctacattatctcttcgttgtagcaaacggagatttt 28145272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 26620374 - 26620314
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||    
T  26620374 tcgttactatgagccgtacctca--ggctacattatctcttcgttgtagcaaacggagttttt 26620314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 26726287 - 26726227
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||    
T  26726287 tcgttactatgagccgtacctca--ggctacattatctcttcgttgtagcaaacggagttttt 26726227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 28145078 - 28145137
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    |||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||    
T  28145078 gttactatgagctgtacctcataggctacattatctctttgttgtagcaaacggagtttt 28145137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 420
Target Start/End: Complemental strand, 27079057 - 27078974
Alignment:
Q  336 atgcacctagactaaggaatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatc 420  Q
    |||||||||||| |||||||||||||||||||||||||| |||| ||||  |||| |||| ||||||||| ||||| ||||||||    
T  27079057 atgcacctagacaaaggaatgtaccccatgtctttctttcttccacttttatcaattccttttgttgcaacgaagc-ttgatatc 27078974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 6406594 - 6406653
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    |||| |||||| ||| |||||||||||||||||||||||||||||||||||| |||||||    
T  6406594 gttattatgagtcgtacctcataggctacattatctcttcgttgtagcaaacagagtttt 6406653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 31113209 - 31113150
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||||  | |||||||||||||||||||||||||||||||||||| |||||||    
T  31113209 gttactatgagctatacctcataggctacattatctcttcgttgtagcaaacagagtttt 31113150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 5249999 - 5249939
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||||||| |||||||  ||||||||||||||||||||||||||| || |||||    
T  5249999 gttactatgagccgtacctcatacactacattatctcttcgttgtagcaaacagaattttt 5249939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 5250134 - 5250075
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||  || |||||||||||||||||| |||||||||||||||| |||||||||    
T  5250134 ttactatgagttgtacctcataggctacattatttcttcgttgtagcaaatggagttttt 5250075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 371
Target Start/End: Complemental strand, 26852297 - 26852258
Alignment:
Q  332 tttgatgcacctagactaaggaatgtaccccatgtctttc 371  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  26852297 tttgatgcacctagactaaggaatgtaccccaagtctttc 26852258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 33296121 - 33296078
Alignment:
Q  263 ctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||||||||||||||||||||||||||| || |||||    
T  33296121 ctcataggctacattatctcttcgttgtagcaaactgatttttt 33296078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 6406525 - 6406586
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttg--tagcaaacggagtttt 305  Q
    ||||||||||||||| |||||||||||||||||| ||||| |||  ||||||||||| ||||    
T  6406525 gttactatgagccgtacctcataggctacattatttcttcattgtatagcaaacggattttt 6406586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 26801317 - 26801273
Alignment:
Q  24 aaataaacaaaatgaagctccattacaccatcaagatacattttg 68  Q
    ||||||| ||||||||||||||||||||||  |||||||||||||    
T  26801317 aaataaataaaatgaagctccattacaccactaagatacattttg 26801273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 26801276 - 26801234
Alignment:
Q  100 tttgcatttcaaatatcatcaaatgacatgttaattgagtctc 142  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||    
T  26801276 tttgcatttcaaatatcatcaaatgacatattatttgaatctc 26801234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 31113261 - 31113227
Alignment:
Q  262 cctcataggctacattatctcttcgttgtagcaaa 296  Q
    ||||||| |||||||||||||||||||||||||||    
T  31113261 cctcataagctacattatctcttcgttgtagcaaa 31113227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 24 - 246
Target Start/End: Original strand, 4614 - 4853
Alignment:
Q  24 aaataaacaaaatgaagctccattacaccatcaagatacattttggttacttctaaacaaagaaaaac-gaggaaaatttgcatttcaaatatcatcaaa 122  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||    
T  4614 aaataaacaaaatgaagctccattacaccatcaagatgcattttggttacttctaaccaaagaaaaacaaaggaaaatttgcatttcaaatatcatcaaa 4713  T
Q  123 tgacatgttaattgagt----------------ctctgcttccaacagtagtagtatcaacaggacccggattccgtgcattaataaaagtccatagttt 206  Q
    |||||||||||||||||                || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4714 tgacatgttaattgagtcttacatttgctaatactttgcttccaacagtagtagtatcaacaggacctggattccgtgcattaataaaagtccatagttt 4813  T
Q  207 caactttcatgcagttgttaatctcggccctttgtgatcg 246  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  4814 caactttcatgcagttgttaatctcggccctttgttatcg 4853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 372 - 434
Target Start/End: Complemental strand, 16852 - 16790
Alignment:
Q  372 tttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctg 434  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16852 tttgttcctctttcgtcaaatcctgctgttgcaatgaagcattgatatcctcctctgtctctg 16790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 340 - 434
Target Start/End: Original strand, 29270364 - 29270458
Alignment:
Q  340 acctagactaaggaatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctg 434  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29270364 acctagactaaggtatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctg 29270458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 5557817 - 5557877
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5557817 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 5557877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 5557754 - 5557811
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5557754 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 5557811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 5558018 - 5558081
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 309  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5558018 gttactatgagtcgttcctcatcggctacattatctcttcgttgtagcaaacggagtttttatc 5558081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 5557885 - 5557943
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5557885 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacagagttt 5557943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 5557951 - 5558010
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctc-ttcgttgtagcaaacggagttt 304  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5557951 gttactatgagccgttcctcataggctacattatctctttcgttgtagcaaacggagttt 5558010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 25336666 - 25336725
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  25336666 gttactatgagccgtacctcataggctacattatcttttcgttgtagcaaacggagtttt 25336725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 5557688 - 5557745
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||    
T  5557688 ttactatgagctgtaccttataggctacattatctcttcgttgtagcaaacggagttt 5557745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 25336472 - 25336521
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaa 296  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25336472 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 25336521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 3165924 - 3165864
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||||    
T  3165924 gttactatgagacgtacctcataagctacattatctcttcgttgtagcaaacagagttttt 3165864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 20810395 - 20810339
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgga 300  Q
    |||||||||||| || | |||||||||||||||||||||||||||||||||||||||    
T  20810395 tcgttactatgaaccatacctcataggctacattatctcttcgttgtagcaaacgga 20810339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 3166057 - 3165998
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||| ||||    
T  3166057 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaatggaatttt 3165998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 3166124 - 3166065
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| |||||    
T  3166124 gttactatgagccgtaccttataggctacattatctcttcgttgtagcaagcggtgtttt 3166065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 297
Target Start/End: Complemental strand, 20810460 - 20810409
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 297  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  20810460 gttactatgacccgtacctcataggctacattatctcttcgttgtagcaaac 20810409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 25336599 - 25336658
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    |||||||||||  || |||||||||||||||||||||||||||||||||||| |||||||    
T  25336599 gttactatgagttgtacctcataggctacattatctcttcgttgtagcaaacagagtttt 25336658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 26082099 - 26082157
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||| |||||| ||| |||||||||||||||||||||| ||||||||||||||||||||    
T  26082099 gttaatatgagtcgtacctcataggctacattatctctccgttgtagcaaacggagttt 26082157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 297
Target Start/End: Complemental strand, 3165857 - 3165806
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 297  Q
    ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||    
T  3165857 gttactatgagacgtacctcataagctacattatctcttcgttgtagcaaac 3165806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 305
Target Start/End: Original strand, 25336552 - 25336591
Alignment:
Q  266 ataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25336552 ataggctacattatctcttcgttgtagcaaacggagtttt 25336591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 299
Target Start/End: Original strand, 26082037 - 26082084
Alignment:
Q  252 atgagccgttcctcataggctacattatctcttcgttgtagcaaacgg 299  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  26082037 atgagccgtacctcataggctacattatcacttcgttgtagcaaacgg 26082084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 29262782 - 29262846
Alignment:
Q  24 aaataaacaaaatgaagctccattacaccatcaagatacattttggttacttctaaacaaagaaaaac 91  Q
    |||||||||||||||||||||||   ||||||||| |||||||||||||||| ||| |||||| ||||    
T  29262782 aaataaacaaaatgaagctccat---accatcaagttacattttggttacttttaaccaaagataaac 29262846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 3165990 - 3165931
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||| ||| ||||||||||| ||||||||||||| |||||||||| ||||||||    
T  3165990 gttactatgagtcgtacctcataggctgcattatctcttcg-tgtagcaaacagagttttt 3165931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 292
Target Start/End: Complemental strand, 21542114 - 21542084
Alignment:
Q  262 cctcataggctacattatctcttcgttgtag 292  Q
    |||||||||||||||||||||||||||||||    
T  21542114 cctcataggctacattatctcttcgttgtag 21542084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 4844083 - 4844047
Alignment:
Q  262 cctcataggctacattatctcttcgttgtagcaaacg 298  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  4844083 cctcataggctacattatctattcgttgtaacaaacg 4844047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 21542181 - 21542145
Alignment:
Q  262 cctcataggctacattatctcttcgttgtagcaaacg 298  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  21542181 cctcataagctacattatctctttgttgtagcaaacg 21542145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 42785962 - 42785899
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42785962 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 42785899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 4341276 - 4341337
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4341276 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 4341337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 48477942 - 48478002
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48477942 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 48478002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 48478270 - 48478330
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48478270 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 48478330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 48478338 - 48478401
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 309  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48478338 gttactatgagccgttcatcataggctacattatctcttcgttgtagcaaacggagtttttatc 48478401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 48478207 - 48478264
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48478207 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 48478264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 48478008 - 48478068
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48478008 tcgttactatgacccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 48478068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 48478074 - 48478134
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48478074 tcgttactatgacccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 48478134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 4341212 - 4341270
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4341212 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 4341270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 4341409 - 4341471
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  4341409 tcgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagatttt 4341471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 4341343 - 4341403
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  4341343 tcgttactatgagccgtacctcataagctacattatctcttcgttgtagcaaacggagttt 4341403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 3078629 - 3078570
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  3078629 ttactatgagccgtacctcataggctacattatctattcgttgtagcaaacggagttttt 3078570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 42786028 - 42785970
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42786028 gttactatcagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 42785970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 34456387 - 34456334
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgga 300  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34456387 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgga 34456334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 34456453 - 34456401
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgg 299  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34456453 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 34456401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 21958612 - 21958553
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||    
T  21958612 gttactatgagtcgtacctcataggctatattatctcttcgttgtagcaaacggagtttt 21958553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 34456521 - 34456462
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||    
T  34456521 gttactatgagccgtacttcatagactacattatctcttcgttgtagcaaacggagtttt 34456462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 21958545 - 21958491
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgga 300  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  21958545 gttactatgagccatacctcataggctacattatctcttcgttgtagcaaacgga 21958491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 48478140 - 48478198
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  48478140 tcgttactatgagccgttcctcgtaggctacattatctc--cgttgtagcaaacggagttt 48478198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 3081329 - 3081388
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  3081329 gttactatgagtcgtacctcataggctacattatct-ttcgttgtagcaaacggagttttt 3081388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 15695502 - 15695443
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    |||||||| |||| | ||||||||||||||||||||||| ||||||||||||||||||||    
T  15695502 gttactataagccttacctcataggctacattatctcttagttgtagcaaacggagtttt 15695443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 15702482 - 15702423
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    |||||||| |||| | ||||||||||||||||||||||| ||||||||||||||||||||    
T  15702482 gttactataagccttacctcataggctacattatctcttagttgtagcaaacggagtttt 15702423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 21958478 - 21958422
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagt 302  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||||    
T  21958478 gttactatgagccgtacctcataggttacattatctctttgttttagcaaacggagt 21958422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 3078565 - 3078503
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||||| ||| |||||||| ||||||||||||||||||||| |||||  |||||||    
T  3078565 tcgttactatgagtcgtacctcatagactacattatctcttcgttgtaacaaacaaagttttt 3078503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 3078777 - 3078719
Alignment:
Q  248 tactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||||||||||  |||||||    
T  3078777 tactatgagccgtacctcataagctacgttatctcttcgttgtagcaaacaaagttttt 3078719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 3081124 - 3081182
Alignment:
Q  248 tactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||| ||| ||||||||||||| |||||||||||||||||||||  ||||||||    
T  3081124 tactatgagtcgtacctcataggctacgttatctcttcgttgtagcaaatagagttttt 3081182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 33616011 - 33615957
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgga 300  Q
    ||||| ||||||||| |||||||| ||||||| ||||||||||||||||||||||    
T  33616011 gttaccatgagccgtacctcatagactacattgtctcttcgttgtagcaaacgga 33615957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 3078694 - 3078650
Alignment:
Q  262 cctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||    
T  3078694 cctcataggctacattatctcatcgttgtagcaaacagagttttt 3078650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 3081191 - 3081251
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||| ||| ||||||||||| ||||||||| ||||||||||||||  |||||||    
T  3081191 gttactatgagtcgtacctcataggctgcattatctcatcgttgtagcaaacaaagttttt 3081251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 15695435 - 15695391
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgt 290  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  15695435 gttactatgagctgtacctcataggctacattatctcttcgttgt 15695391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 15702415 - 15702371
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgt 290  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  15702415 gttactatgagctgtacctcataggctacattatctcttcgttgt 15702371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 3081260 - 3081320
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||| ||| || |||||||| ||||||||| || ||||||||||| ||||||||    
T  3081260 gttactatgagtcgtaccccataggctgcattatctcatcattgtagcaaacagagttttt 3081320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 3081395 - 3081454
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||| ||| |||||| ||||||||||||||| ||||| |||||| | ||||||    
T  3081395 gttactatgagtcgtacctcattggctacattatctctccgttgcagcaaatgaagtttt 3081454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 41528638 - 41528701
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41528638 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 41528701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 41528506 - 41528564
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41528506 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 41528564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 41528572 - 41528630
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41528572 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 41528630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 41528441 - 41528498
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41528441 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 41528498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 37368967 - 37368915
Alignment:
Q  255 agccgttcctcataggctacattatctcttcgttgtagcaaacggagttttta 307  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  37368967 agccgtacctcataggctacattatctcttcgttgtagcaaacggatttttta 37368915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 37369046 - 37368983
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttta 307  Q
    ||||||||||||| ||| ||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  37369046 tcgttactatgagtcgtacctcataggctacattatctctttgttgtagtaaacggatttttta 37368983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 2743377 - 2743312
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2743377 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagattttatc 2743312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 2743443 - 2743383
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2743443 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 2743383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 2743509 - 2743449
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2743509 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 2743449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 31314981 - 31315040
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31314981 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 31315040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 2743573 - 2743515
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2743573 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 2743515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 252 - 305
Target Start/End: Complemental strand, 31347136 - 31347083
Alignment:
Q  252 atgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31347136 atgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 31347083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 31346889 - 31346830
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||    
T  31346889 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacagagtttt 31346830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 31315049 - 31315107
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||    
T  31315049 ttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacagagtttt 31315107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 31315119 - 31315177
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||    
T  31315119 ttactatgagcagtacctcataggctacattatctcttcgttgtagcaaacagagtttt 31315177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 31315187 - 31315245
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||    
T  31315187 ttactatgagccatacctcataggctacattatctcttcgttgtagcaaacggattttt 31315245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 31347007 - 31346949
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    |||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  31347007 ttactatgagtcgtaccttataggctacattatctcttcgttgtagcaaacggagtttt 31346949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 31347074 - 31347016
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||    
T  31347074 ttactatgagccgtatctcatatgctacattatctcttcgttgtagcaaacggagtttt 31347016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 11951333 - 11951280
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgg 299  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  11951333 gttactatgagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 11951280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 300
Target Start/End: Complemental strand, 31346935 - 31346901
Alignment:
Q  266 ataggctacattatctcttcgttgtagcaaacgga 300  Q
    ||||||||||||||||||||||||||| |||||||    
T  31346935 ataggctacattatctcttcgttgtagaaaacgga 31346901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 5599911 - 5599971
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5599911 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 5599971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 5599979 - 5600042
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 309  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5599979 gttactatgagccgttcatcataggctacattatctcttcgttgtagcaaacggagtttttatc 5600042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 5599848 - 5599905
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5599848 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 5599905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 13713302 - 13713363
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13713302 tcgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 13713363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 5909058 - 5909116
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5909058 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 5909116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 14190483 - 14190541
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14190483 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 14190541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 31663366 - 31663308
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31663366 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 31663308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 1506106 - 1506167
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  1506106 tcgttactatgagccgtacctcataggctatattatctcttcgttgtagcaaacggagtttt 1506167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 1506173 - 1506233
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  1506173 tcgttactatgagccatacctcataggctacattatctcttcgttgtagcaaacggagttt 1506233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 4852635 - 4852695
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  4852635 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacagagttttt 4852695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 1505975 - 1506034
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  1505975 gttactatgagccgtacttcataggctacattatctcttcgttgtagcaaacggagtttt 1506034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 13713172 - 13713230
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  13713172 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacagagtttt 13713230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 31663434 - 31663376
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  31663434 ttactatgagccgtatctcataggctacattatctcttcgttgtagcaaacggagtttt 31663376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 5599782 - 5599839
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  5599782 ttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacggagttt 5599839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 5909122 - 5909175
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 297  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5909122 tcgttactatgagtcgttcctcataggctacattatctcttcgttgtagcaaac 5909175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 1506040 - 1506100
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||    
T  1506040 tcgttactatgagccttacctcataggctacattatctcttcgttgtagcaaactgagttt 1506100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 4852566 - 4852626
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  4852566 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacagagttttt 4852626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 5578507 - 5578448
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||    
T  5578507 gttactatgagtcgtacctcgtaggctacattatctcttcgttgtagcaaacggagtttt 5578448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 13713104 - 13713163
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||    
T  13713104 gttactatgagtcctacctcataggctacattatctcttcgttgtagcaaacggagtttt 13713163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 31663636 - 31663577
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||    
T  31663636 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacagagtttt 31663577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 1506239 - 1506301
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||  |||||||    
T  1506239 tcgttactatgagccgtacctcataggctacattatctcttcgttgttgcaaacatagttttt 1506301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 13702611 - 13702669
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    ||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||    
T  13702611 gttactatgagtcctacctcataggctacattatctcttcgttgtagcaaacggagttt 13702669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 14190549 - 14190609
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||| ||||    
T  14190549 gttactatgagccgtacctcgtaggctacattatctcttcgttgtagcaaacagagatttt 14190609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 262 - 305
Target Start/End: Complemental strand, 31663486 - 31663443
Alignment:
Q  262 cctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  31663486 cctcataggctacattatctcttcgttgtagcaaacggagtttt 31663443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 31663569 - 31663510
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    |||||| |||||||| ||| |||||||||||||||||||| |||||||||||||||||||    
T  31663569 gttactttgagccgtaccttataggctacattatctcttcattgtagcaaacggagtttt 31663510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 13713369 - 13713431
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    |||||| |||||| | | ||||||||| |||||||||||||||||||||||||||||||||||    
T  13713369 tcgttattatgagtcatacctcataggatacattatctcttcgttgtagcaaacggagttttt 13713431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 5578313 - 5578260
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 297  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||||    
T  5578313 tcgttactataagtcgtacctcataggctacattatctcttcgttgtagcaaac 5578260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 13713239 - 13713296
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||||||||| ||| |||||||||||||||||||||||||| ||||||||| ||||||    
T  13713239 ttactatgagtcgtacctcataggctacattatctcttcgtcgtagcaaacagagttt 13713296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 5578377 - 5578322
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggag 301  Q
    ||||||||||||| | |||||| |||||||||||||||||||||||||||| ||||    
T  5578377 gttactatgagccatacctcattggctacattatctcttcgttgtagcaaaaggag 5578322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 6735439 - 6735379
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||| |||  |||||| |||||||||||||||||||||||||||| ||| ||||    
T  6735439 gttactatgagtcgtatctcataagctacattatctcttcgttgtagcaaacagagatttt 6735379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 31663297 - 31663238
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||  || |||||||||||||||||||| ||| |||||||||||||| |||||    
T  31663297 ttactatgagttgtacctcataggctacattatctattcattgtagcaaacggatttttt 31663238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 5578246 - 5578182
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacat--tatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||||||| | |||||||| ||||||  |||||||||||||||| |||||||| ||||    
T  5578246 tcgttactatgagccatacctcatagactacattatatctcttcgttgtagtaaacggagatttt 5578182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 297
Target Start/End: Original strand, 4852721 - 4852756
Alignment:
Q  262 cctcataggctacattatctcttcgttgtagcaaac 297  Q
    ||||||||||||||||||||||||| ||||||||||    
T  4852721 cctcataggctacattatctcttcggtgtagcaaac 4852756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 6735371 - 6735314
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||| ||| ||||||| ||||||||||||||||   ||||||||| ||||||||    
T  6735371 gttactatgagtcgtacctcataagctacattatctcttc---gtagcaaacagagttttt 6735314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 18111575 - 18111633
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18111575 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 18111633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 28034793 - 28034851
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28034793 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 28034851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 14521098 - 14521046
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaa 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14521098 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaa 14521046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 5835618 - 5835677
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5835618 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 5835677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 5938854 - 5938913
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  5938854 gttactatgagccgtacctcataggctacatcatctcttcgttgtagcaaacggagtttt 5938913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 5938921 - 5938980
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  5938921 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggaatttt 5938980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 18111440 - 18111499
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  18111440 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggggtttt 18111499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 5938989 - 5939047
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  5938989 ttactatgagccgtacctcatagactacattatctcttcgttgtagcaaacggagtttt 5939047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 14521162 - 14521104
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  14521162 gttactatgagccgtacctcatacgctacattatctcttcgttgtagcaaacggagttt 14521104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 19384201 - 19384262
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||    
T  19384201 tcgttactatgagccgtacctcataggttacattatctcttcgtcgtagcaaacggagtttt 19384262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 5938787 - 5938846
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||    
T  5938787 gttactatgagtcgtacctcataggctatattatctcttcgttgtagcaaacggagtttt 5938846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 18111507 - 18111566
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    |||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  18111507 gttattatgagcggtacctcataggctacattatctcttcgttgtagcaaacggagtttt 18111566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 28034657 - 28034710
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 297  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  28034657 tcgttactatgagccgtacctcataggctacattatttcttcgttgtagcaaac 28034710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 29897111 - 29897168
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtt 303  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||    
T  29897111 gttactatgagccgtacctcataggctacattatctctttgttgtagcaaacagagtt 29897168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 19384087 - 19384147
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| |||||||| |||||||    
T  19384087 tcgttactatgagtcgtacctcataggctacattatctcttcgtcgtagcaaatggagttt 19384147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 29897056 - 29897108
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacg 298  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  29897056 gttactatgagccgtacctcataggctacattatttcttcgttgtagcaaacg 29897108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 5938720 - 5938779
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||||||||| |||||||    
T  5938720 gttactatgagtcgtacctcatagtctacattatctcttcgttgtagcaaactgagtttt 5938779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 19441052 - 19441111
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  19441052 gttactatgagtcgtacctcatagactacattatctcttcgtcgtagcaaacggagtttt 19441111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 297
Target Start/End: Original strand, 19441119 - 19441170
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 297  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  19441119 gttactacgagccgtacctcataggctacattatctcttcgttgtagcaaac 19441170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 28034726 - 28034785
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    |||||||||||  || |||||||||||||||||||||||||||||||||||| |||||||    
T  28034726 gttactatgagttgtacctcataggctacattatctcttcgttgtagcaaacagagtttt 28034785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 2746838 - 2746780
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    |||||||||||||| |||||||||||  |||||||||||||||||||||||||| ||||    
T  2746838 ttactatgagccgtacctcataggctttattatctcttcgttgtagcaaacggattttt 2746780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 19480043 - 19479989
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgga 300  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  19480043 gttactatgagtcgtacctcataggctatattatctcttcgttgtagcaaacgga 19479989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 19384330 - 19384375
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttg 289  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  19384330 tcgttactatgagccgtacctcataggctacattatctcttcgttg 19384375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 45227351 - 45227290
Alignment:
Q  247 ttactatgagc-cgttcctcataggctacattatctcttcgttgtagcaaacggagttttta 307  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||||||||| |||||||||    
T  45227351 ttactatgagcacgtaccacataggctacattatctcttcgttgtagcaaacagagttttta 45227290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 19384282 - 19384324
Alignment:
Q  263 ctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  19384282 ctcataggctacattatctcttcgtcgtagcaaacggagtttt 19384324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 29897166 - 29897226
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    |||||||||| |||| |||||||  ||| ||||||||||||||||||||||| ||||||||    
T  29897166 gttactatgaaccgtacctcataaactatattatctcttcgttgtagcaaacagagttttt 29897226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 19384148 - 19384195
Alignment:
Q  257 ccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 304  Q
    |||| ||||||||| |||||||||||||||| ||||||||||||||||    
T  19384148 ccgtacctcataggttacattatctcttcgtcgtagcaaacggagttt 19384195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 19480110 - 19480050
Alignment:
Q  247 ttactatgagc-cgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||| ||| |||||||||||||||||||||||| |||||| ||||  |||||||    
T  19480110 ttactatgagcacgtacctcataggctacattatctcttcattgtaggaaacaaagttttt 19480050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 45227283 - 45227234
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaa 296  Q
    ||||||| || ||| |||||| ||||||||||||||||| ||||||||||    
T  45227283 ttactataagtcgtacctcatgggctacattatctcttcattgtagcaaa 45227234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 19480161 - 19480125
Alignment:
Q  262 cctcataggctacattatctcttcgttgtagcaaacg 298  Q
    ||||| || ||||||||||||||||||||||||||||    
T  19480161 cctcaaagactacattatctcttcgttgtagcaaacg 19480125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 22207896 - 22207955
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  22207896 gttactatgagccgtacctcataggttacattatctcttcgttgtagcaaacggagtttt 22207955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 51844412 - 51844469
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggag 301  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  51844412 tcgttactatgagccgtacctcataagctacattatctcttcgttgtagcaaacggag 51844469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 14114814 - 14114754
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  14114814 gttactatgagtcgtaccttataggctacattatctcttcgttgtagcaaacggagttttt 14114754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 22208030 - 22208082
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacg 298  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22208030 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacg 22208082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 15088567 - 15088626
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    |||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||    
T  15088567 ttactatgagccgtacctcatatgctacattatctcttcgttttagcaaacggagttttt 15088626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 22207692 - 22207751
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||    
T  22207692 ttactatgagccgtatctcataggctacattatctcttcgttgtagcaaacgaagttttt 22207751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 22207760 - 22207819
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    |||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22207760 gttactataagtcgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 22207819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 22207828 - 22207887
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||    
T  22207828 ttactatgagccgtaactcataggctacattatctcttcgttgtagcaaacgaagttttt 22207887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 22211175 - 22211234
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    |||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||    
T  22211175 ttactatgagccgtacctcatatgctacattatctcttcgttttagcaaacggagttttt 22211234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 22208098 - 22208148
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 297  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22208098 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 22208148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 22207964 - 22208023
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||| || |||||    
T  22207964 ttactatgagccgtacctcataggctacattatctcttggttgtagcaaacagaattttt 22208023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 301
Target Start/End: Original strand, 51844347 - 51844402
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggag 301  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||    
T  51844347 gttactatgagtcgtacctcataggctacattatctcttcgctgtagcaaacggag 51844402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 15088633 - 15088687
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgga 300  Q
    ||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  15088633 gttactatgagccgtacctcatagactacattatctcttcattgtagcaaacgga 15088687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 22207625 - 22207683
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||    
T  22207625 ttactatgagccgtacctcatatgctacattatctcttcgttgtaacaaacggaatttt 22207683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 22211241 - 22211295
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgga 300  Q
    ||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  22211241 gttactatgagccgtacctcatagactacattatctcttcattgtagcaaacgga 22211295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 14114745 - 14114685
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||| ||| ||||||||| |||||||||||||| ||||||||||||||| ||||    
T  14114745 gttactatgagtcgtacctcataggttacattatctcttcattgtagcaaacggagatttt 14114685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 14114883 - 14114823
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||| ||| |||| || |||||||||||||||||||||||||||| ||||||||    
T  14114883 gttactatgagtcgtacctcgtaagctacattatctcttcgttgtagcaaacagagttttt 14114823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 14114954 - 14114894
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||||||  |||| ||||||||||||||||||||||||||||||| || |||||    
T  14114954 gttactatgagccgcacctcgtaggctacattatctcttcgttgtagcaaacagaattttt 14114894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 51844479 - 51844533
Alignment:
Q  244 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacg 298  Q
    |||||| |||||| ||| |||||||||||||||||||||||| || || ||||||    
T  51844479 tcgttattatgagtcgtacctcataggctacattatctcttcattataacaaacg 51844533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 297
Target Start/End: Original strand, 90477 - 90528
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 297  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  90477 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 90528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 90544 - 90601
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtt 303  Q
    ||||||||||||||| |||||||||| | ||||||||||||||||||||||| |||||    
T  90544 gttactatgagccgtacctcataggcaaaattatctcttcgttgtagcaaacagagtt 90601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 297
Target Start/End: Original strand, 90613 - 90663
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 297  Q
    ||||||||||||||| | |||||||||||||||||| |||||||||||||||    
T  90613 gttactatgagccgtac-tcataggctacattatctattcgttgtagcaaac 90663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 40053 - 40001
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacg 298  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  40053 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacg 40001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 39985 - 39935
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 297  Q
    |||||||||| | | ||||||||||||||||||||||||||||||||||||    
T  39985 ttactatgagtcatacctcataggctacattatctcttcgttgtagcaaac 39935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 69755 - 69695
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 306  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||| || |||||    
T  69755 gttactatgagccgtacctcataggctacattatctcttcattgtagcaaacagatttttt 69695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 69889 - 69830
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    ||||||||||| ||| | |||||||||| |||||||||||||||||||||||||||||||    
T  69889 gttactatgagtcgtgcatcataggctatattatctcttcgttgtagcaaacggagtttt 69830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 297
Target Start/End: Complemental strand, 69822 - 69771
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 297  Q
    |||||||||||  || ||||||||||||||||||||||||||||||||||||    
T  69822 gttactatgagttgtacctcataggctacattatctcttcgttgtagcaaac 69771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 297
Target Start/End: Original strand, 3626 - 3677
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 297  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  3626 gttactatgacccgtacctcataggctacattatctcttcgttgtagcaaac 3677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 3560 - 3618
Alignment:
Q  247 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 305  Q
    |||||||||||| | ||||||||||||||||||||||||||||||  ||||||||||||    
T  3560 ttactatgagccttacctcataggctacattatctcttcgttgtaataaacggagtttt 3618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 3693 - 3737
Alignment:
Q  246 gttactatgagccgttcctcataggctacattatctcttcgttgt 290  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  3693 gttactatgagccgtacctcataggctacattatctcttcgttgt 3737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University