View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_30 (Length: 427)
Name: NF1643_high_30
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 20 - 416
Target Start/End: Original strand, 42025832 - 42026226
Alignment:
| Q |
20 |
gcaataacccaagtgcagttgttgtggcacgtgctaaccaaataagtgacattcctaagaaacattcattgtttggtactgtttatgccattgacaatcc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42025832 |
gcaataacccaagtgcagttgttgtggcacgtgctaaccaaacaagtgacattcctaagaaacattcattgtttggtactgtttatgccattgacaatcc |
42025931 |
T |
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| Q |
120 |
tcttagggaaggtcctgaagaaacatcaaatgtggttggaaatgcacaagatctttatgtggcatctctagccaaagtgaagatgtgacacttactatgt |
219 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
42025932 |
tcttagggaaggtcctgaagaaacatcaaatgtagttggaaatgcacaaggtctttatgtggcatct--agccagagtgaagatgtgacacttactatgt |
42026029 |
T |
|
| Q |
220 |
atgttgattatgctttcacctctggtgaattaaatggaagctcctttagtgttctttcgaggaatccggtgagggaaccgacgagggaactcgcggtggt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42026030 |
atgttgattatgctttcacctctggtgaattaaatggaagctcctttagtgttctttcgaggaatccggtgagggaaccgacgagggaactcgcggtggt |
42026129 |
T |
|
| Q |
320 |
cggaggaagaggaatgtttaggatggccactggttttgctcagattagggctcattttcttaatgctacaactggtgatgggatcattgagtataat |
416 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42026130 |
cggaggaagaggaaagtttaggatggccactggttttgctcagattagggctcattttcttaatgctacaactggtgatgggatcgttgagtataat |
42026226 |
T |
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