View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_34 (Length: 412)
Name: NF1643_high_34
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 6 - 396
Target Start/End: Original strand, 34082814 - 34083201
Alignment:
| Q |
6 |
gagtgagatgaaacaaacaatatacaaattgtgttgggattaagtttcattggttaatttactaactaatgtcttgccttgatcgaccctaaagtgcttt |
105 |
Q |
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| T |
34082814 |
gagtgaggtgaaacaaacaatatacaaattgtgttgggattaagtttcatcagttaatttactaactaatgtcttgccttgatcgaccctaaactgcttt |
34082913 |
T |
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| Q |
106 |
tattttaattaaaccttaacctaccacccttcatagatctcaatgtctcgcatataatcggagatcatctctagtctcttatctttgatgtctcactcag |
205 |
Q |
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| T |
34082914 |
tattttaattaaattttaacctaccatccttcatagatctcaatgtctcgcatataacctgatatcatctctagtctcttacctctgatatctcactcgg |
34083013 |
T |
|
| Q |
206 |
ttagctaaaagagaaacattaagttcggatgtttagcttgatatctcagcaactaacatttacaagtgaactaacccatgtcccttacatcggacaaaac |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
34083014 |
ttagctaaaagagaaacattaagttcggatgtttagcttgatttctc-gcaactaacatttacaagtgaacttacccatgtcccttacatcggac-aaac |
34083111 |
T |
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| Q |
306 |
aaagcaatagaagatagaaatcaattcaaagacaaacctataaaactaatatacagatcacccaactaaattcacaatgccatgaaaggag |
396 |
Q |
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| T |
34083112 |
aaagcaatagaagatagaaatcaattcaaagacaaacctataaaactaatatacatct-acccaactaaattcacaatgccatgaaaggag |
34083201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 18435663 - 18435724
Alignment:
| Q |
170 |
tcatctctagtctcttatctttgatgtctcactcagttagctaaaagagaaacattaagttc |
231 |
Q |
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| T |
18435663 |
tcatctcttgtctctaaaatctgatgtttcactcagttagctaaaagtgaaacattaagttc |
18435724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 26744557 - 26744345
Alignment:
| Q |
14 |
tgaaacaaacaatatacaaattgtgttgggattaagtttcattggttaatttactaactaatgtcttgccttgatcgaccctaaagtgcttttattttaa |
113 |
Q |
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||||||||||||| ||||| ||||||| |||||||| |||||| |||| |||||||| |||||| | || || ||| ||| | | |||| || |
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| T |
26744557 |
tgaaacaaacaatttacaatttgtgttaggattaagcttcattagttagtttactaa----tgtctttctttaatggactaaaaactcttattatcccaa |
26744462 |
T |
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| Q |
114 |
ttaaaccttaacctaccacccttcatagatctcaatgtctcgcatataatcggagatcatctctagtctcttatctttgatgtctcactcagttagctaa |
213 |
Q |
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| T |
26744461 |
ttatatcttcacctatcacccttcatagatctcgatgtctcacaaataatgggagataatctctagtatctaacctttgatgtcttgctcagttagctaa |
26744362 |
T |
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| Q |
214 |
aagagaaacattaagtt |
230 |
Q |
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|||||| |||| |||| |
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| T |
26744361 |
tagagaagcatttagtt |
26744345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 16573240 - 16573184
Alignment:
| Q |
14 |
tgaaacaaacaatatacaaattgtgttgggattaagtttcattggttaatttactaa |
70 |
Q |
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| T |
16573240 |
tgaaacacacgatatacaaaatgtgttggaattaagtttcattagttagttcactaa |
16573184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 7480506 - 7480408
Alignment:
| Q |
133 |
ccttcatagatctcaatgtctcgcatataatcggagatcatctctagtctcttatctttgatgtctcactcagttagctaaaagagaaacattaagttc |
231 |
Q |
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| T |
7480506 |
ccttcatagatctcaatgtctcgcagataattggaaatcatctctagtctccaaccttcgatgtctcgcctaggaagctaaaagataagcattaagttc |
7480408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 231
Target Start/End: Complemental strand, 31930738 - 31930612
Alignment:
| Q |
105 |
ttattttaattaaaccttaacctaccacccttcatagatctcaatgtctcgcatataatcggagatcatctctagtctcttatctttgatgtctcactca |
204 |
Q |
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|||||| ||||| ||||| || || |||| | ||||||||| ||||||| | ||||| |||||| |||||||||||| | | |||||||| | || |
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| T |
31930738 |
ttatttcaattataccttcacttatcaccttaaatagatctcgatgtctcatagataatgagagatcgtctctagtctctaacttatgatgtcttgccca |
31930639 |
T |
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| Q |
205 |
gttagctaaaagagaaacattaagttc |
231 |
Q |
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||||||| |||||||| |||||||||| |
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| T |
31930638 |
gttagctgaaagagaagcattaagttc |
31930612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 23720209 - 23720254
Alignment:
| Q |
181 |
ctcttatctttgatgtctcactcagttagctaaaagagaaacatta |
226 |
Q |
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||||||||||||||||||| |||| |||||||||||| || ||||| |
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| T |
23720209 |
ctcttatctttgatgtctcgctcaattagctaaaagataagcatta |
23720254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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