View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1643_high_40 (Length: 389)
Name: NF1643_high_40
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_40 |
 | |
|
| [»] scaffold0011 (2 HSPs) |
| | |
|
| [»] scaffold0250 (1 HSPs) |
| | |
|
| [»] scaffold0246 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0011 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 222626 - 222272
Alignment:
| Q |
1 |
atcaagattataatatcttcgtctctaaatataagactcttatgcgtttcttacttgtcatttttataatacttctttaaaacaattttcaaacatgcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
222626 |
atcaagattataatatcttcgtctctaaatataagactcttatgcgttttttacttgtcatttttataatacttctttaaaacaattttcaaatatgcat |
222527 |
T |
|
| Q |
101 |
taaataatttttcaccaaaatagccttaactttgaactgcatataatcattttataac--attgtacctttttaaggttgggaacaagagctgcaagagc |
198 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
222526 |
taaataatttttcaccaaaatacccttaactttgaactgcatataatcattttataacatattgtacctttttaaggttgggaacaagagctgcaagagc |
222427 |
T |
|
| Q |
199 |
aatgaagctttgagtgagtttctctcttcgctttctctctgccatgatatgatcctcgccattagtagcacgagacctttt---------gctttttgag |
289 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| | |||||||| |
|
|
| T |
222426 |
aatgaagctttgggtgagtttctctcttcgctttctctctgccatgatatgatcctcaccattattagcacgagaccttttggtttttgaggtttttgag |
222327 |
T |
|
| Q |
290 |
gtttttgttgaatgattcttattttccatctcagttggagacactgaaactcttt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
222326 |
gtttttgttgaatgattcttattttccaattcggttggagacacggaaactcttt |
222272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 184731 - 184383
Alignment:
| Q |
1 |
atcaagattataatatcttcgtctctaaatataagactcttatgcgtttcttacttgtcatttttataatacttctttaaaacaattttcaaacatgcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
184731 |
atcaagattataatatcttcgtctctaaatataagactcttatgcgttt----tttgtcatttttataatacttctttaaaacaattttcaaacatggat |
184636 |
T |
|
| Q |
101 |
taaataatttttcaccaaaatagccttaactttgaactgcatataatcattttataacattgtacctttttaaggttgggaacaagagctgcaagagcaa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
184635 |
taaataatttttcaccaaaatacccttaactttgaactgcatataatcattttataacattgtacctttttaaggttgggaacaagagctgcaagagcaa |
184536 |
T |
|
| Q |
201 |
tgaagctttgagtgagtttctctcttcgctttctctctgccatgatatgatcctcgccattagtagcacgagacctttt---------gctttttgaggt |
291 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| | |||||||||| |
|
|
| T |
184535 |
tgaagctttgggtgagtttctctcttcgctttctctctgccatgatatgatcctcaccattattagcacgagaccttttggtttttgaggtttttgaggt |
184436 |
T |
|
| Q |
292 |
ttttgttgaatgattcttattttccatctcagttggagacactgaaactcttt |
344 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
184435 |
ttttgttgaatgattcttattttccaattcggttggagacactgaaactcttt |
184383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 159 - 298
Target Start/End: Complemental strand, 17125293 - 17125154
Alignment:
| Q |
159 |
attgtacctttttaaggttgggaacaagagctgcaagagcaatgaagctttgagtgagtttctctcttcgctttctctctgccatgatatgatcctcgcc |
258 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||| |||||||||||||| | || |
|
|
| T |
17125293 |
attgtacctttttaaggttaggaacaagagctgcaagagcaatgaagttttgggtgagtttctctcttctctttctctcagccatgatatgatcttgacc |
17125194 |
T |
|
| Q |
259 |
attagtagcacgagaccttttgctttttgaggtttttgtt |
298 |
Q |
| |
|
|| | || ||||||||||||||| ||||||||||||||| |
|
|
| T |
17125193 |
atgaagagtacgagaccttttgctctttgaggtttttgtt |
17125154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 159 - 295
Target Start/End: Complemental strand, 17115856 - 17115720
Alignment:
| Q |
159 |
attgtacctttttaaggttgggaacaagagctgcaagagcaatgaagctttgagtgagtttctctcttcgctttctctctgccatgatatgatcctcgcc |
258 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||| |||||||||||||| | || |
|
|
| T |
17115856 |
attgtacctttttaaggttaggaacaagagctgcaagagcaatgaagttttgggtgagtttctctcttctctttctctcagccatgatatgatcttgacc |
17115757 |
T |
|
| Q |
259 |
attagtagcacgagaccttttgctttttgaggttttt |
295 |
Q |
| |
|
|| | || ||||||||||||||| |||||||||||| |
|
|
| T |
17115756 |
atgaagagtacgagaccttttgctctttgaggttttt |
17115720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 159 - 336
Target Start/End: Complemental strand, 25239441 - 25239267
Alignment:
| Q |
159 |
attgtacctttttaaggttgggaacaagagctgcaagagcaatgaagctttgagtgagtttctctcttcgctttctctctgccatgatatgatcctcgcc |
258 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| | || |||||||| |||||||| |||||||| |||||||| |||||| || |
|
|
| T |
25239441 |
attgtacctttttaaggttaggaacaagagctgcaagagcaatgaaggtctgggtgagtttttctcttcgatttctctcagccatgatgtgatccctacc |
25239342 |
T |
|
| Q |
259 |
attagtagcacgagaccttttgctttttgaggtttttgttgaatgattcttattttccatctcagttggagacactga |
336 |
Q |
| |
|
|| |||||||| |||||||| ||||||||||| |||||| |||||| ||||||||| || |||||||||||||| |
|
|
| T |
25239341 |
at---gagcacgaggccttttgccttttgaggtttctgttgagtgattcatattttccaattcggttggagacactga |
25239267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 159 - 298
Target Start/End: Original strand, 25064464 - 25064600
Alignment:
| Q |
159 |
attgtacctttttaaggttgggaacaagagctgcaagagcaatgaagctttgagtgagtttctctcttcgctttctctctgccatgatatgatcctcgcc |
258 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| |||||||| ||||| || |
|
|
| T |
25064464 |
attgtaccttcttaaggttaggaacaagagctgcaagagcaatgaaggtctgagtgagtttctctcttcgatttctctcagccatgatgtgatctctacc |
25064563 |
T |
|
| Q |
259 |
attagtagcacgagaccttttgctttttgaggtttttgtt |
298 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
25064564 |
at---gagcacgaggccttttgctttttgaggtttttgtt |
25064600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 163 - 298
Target Start/End: Original strand, 25113191 - 25113323
Alignment:
| Q |
163 |
tacctttttaaggttgggaacaagagctgcaagagcaatgaagctttgagtgagtttctctcttcgctttctctctgccatgatatgatcctcgccatta |
262 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| |||| |
|
|
| T |
25113191 |
taccttcttaaggttaggaacaagagctgcaagagcaatgaagctttgggtgagtttctctcttcgatttctctcagccatgatgtgatctctaccat-- |
25113288 |
T |
|
| Q |
263 |
gtagcacgagaccttttgctttttgaggtttttgtt |
298 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||| |
|
|
| T |
25113289 |
-gagcacgtggccttttgctttttgaggtttttgtt |
25113323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 163 - 279
Target Start/End: Complemental strand, 15845 - 15729
Alignment:
| Q |
163 |
tacctttttaaggttgggaacaagagctgcaagagcaatgaagctttgagtgagtttctctcttcgctttctctctgccatgatatgatcctcgccatta |
262 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| | || |||||||||||||||| ||||||||| |||||||||||||| | |||| | |
|
|
| T |
15845 |
tacctttttaaggttaggaacaagagctgcaagagcaatgaagttctgtgtgagtttctctcttctctttctctcagccatgatatgatcatgaccatga |
15746 |
T |
|
| Q |
263 |
gtagcacgagacctttt |
279 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
15745 |
ttaccacgagacctttt |
15729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 5114 - 5205
Alignment:
| Q |
161 |
tgtacctttttaaggttgggaacaagagctgcaagagcaatgaagctttgagtgagtttctctcttcgctttctctctgccatgatatgatc |
252 |
Q |
| |
|
||||||||||| | ||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5114 |
tgtacctttttcaagttaggaacaagagctgcaagagcaatgaagctttggctaagtttctctcttcgctttctctcagccatgatatgatc |
5205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 4892035 - 4891960
Alignment:
| Q |
179 |
ggaacaagagctgcaagagcaatgaagctttgagtgagtttctctcttcgctttctctctgccatgatatgatcct |
254 |
Q |
| |
|
|||| |||||| || |||||||| |||| ||| ||||||||||||||| |||||||||||| |||||||| |||| |
|
|
| T |
4892035 |
ggaataagagcagctagagcaatcaagcactgactgagtttctctcttctctttctctctgctatgatatggtcct |
4891960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 4916813 - 4916745
Alignment:
| Q |
179 |
ggaacaagagctgcaagagcaatgaagctttgagtgagtttctctcttcgctttctctctgccatgata |
247 |
Q |
| |
|
|||| |||||| || |||| ||| |||| ||| ||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
4916813 |
ggaataagagcagctagagtaattaagcactgactgagtttctctcttctctttctctccgccatgata |
4916745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University