View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1643_high_46 (Length: 376)
Name: NF1643_high_46
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_46 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 203 - 376
Target Start/End: Original strand, 15996199 - 15996372
Alignment:
| Q |
203 |
tgcatgtcgcgttatataagtctatgatatacagaaatcattacataatcgtattttaactgcgaagtatgtgtacggatgacattttgagattctacgt |
302 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
15996199 |
tgcatgtcgcgttatatcagtctatgatatacataaatcattacataatcgtattttaactgcgaagtatgtgtatggatgaccttttgagattctacgt |
15996298 |
T |
|
| Q |
303 |
gtcctataaatgtattaagctatagtattgcaaggttaggaaaagccaagatttgccatcttttccctgcagct |
376 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| | | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15996299 |
gtcctataaatgtatttagctatagtattgcaatggaacgaaaagccaagatttgccatcttttccctgcagct |
15996372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 15996045 - 15996200
Alignment:
| Q |
16 |
caatatatgcagactcatgcaaaagctttaaaatagggggaaattcacacaaacttttatcatagcatagctcagtttcacattaataattacattacat |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15996045 |
caatatatgcagactcatggaaaagctttaaaataggggaaaattcacacaaacttttgtcatagcatagctcagtttcacattaata-----attacat |
15996139 |
T |
|
| Q |
116 |
tccctcaacatagtaacagtggcgtgattttcctattcacttccaaccgcttacattattg |
176 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15996140 |
tccctcaacaaagtaatagtggcgtgattttcctattcacttccaaccacttacattattg |
15996200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 12063763 - 12063842
Alignment:
| Q |
25 |
cagactcatgcaaaagctttaaaatagggggaaattcacacaaacttttatcatagcatagctcagtttcacattaataa |
104 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12063763 |
cagactcatggaaaagctttaaaatagggggaaattcacacaaacttttatcatagcatagctcagtttcacaataataa |
12063842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 195 - 298
Target Start/End: Original strand, 13737924 - 13738027
Alignment:
| Q |
195 |
caaataggtgcatgtcgcgttatataagtctatgatatacagaaatcattacataatcgtattttaactgcgaagtatgtgtacggatgacattttgaga |
294 |
Q |
| |
|
||||||||||||||||| |||| || ||| |||||||| ||||||||| ||||||||||||||||||| ||||||| ||||||| ||||| || || || |
|
|
| T |
13737924 |
caaataggtgcatgtcgagttagatcggtcaatgatatatagaaatcataacataatcgtattttaactacgaagtaggtgtacgaatgaccttctggga |
13738023 |
T |
|
| Q |
295 |
ttct |
298 |
Q |
| |
|
|||| |
|
|
| T |
13738024 |
ttct |
13738027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 13764756 - 13764846
Alignment:
| Q |
195 |
caaataggtgcatgtcgcgttatataagtctatgatatacagaaatcattacataatcgtattttaactgcgaagtatgtgtacggatgac |
285 |
Q |
| |
|
||||||||||||||||| |||| || ||| |||||||| ||||||||| ||||||||||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
13764756 |
caaataggtgcatgtcgagttagatcggtcaatgatatatagaaatcataacataatcgtattttaactacgaagtaggtgtatggatgac |
13764846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 285
Target Start/End: Original strand, 11614234 - 11614284
Alignment:
| Q |
235 |
agaaatcattacataatcgtattttaactgcgaagtatgtgtacggatgac |
285 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||| ||||| ||||||| |
|
|
| T |
11614234 |
agaaatcataacataatcgtattttaattgcgaagtaggtgtatggatgac |
11614284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 13751363 - 13751453
Alignment:
| Q |
195 |
caaataggtgcatgtcgcgttatataagtctatgatatacagaaatcattacataatcgtattttaactgcgaagtatgtgtacggatgac |
285 |
Q |
| |
|
||||||||||||||| | |||| | |||||||||||| | ||||||| ||||||| |||||| |||| ||||||| ||||| ||||||| |
|
|
| T |
13751363 |
caaataggtgcatgttgagttagaacggtctatgatatatataaatcataacataattgtatttaaactacgaagtaggtgtatggatgac |
13751453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 39403860 - 39403929
Alignment:
| Q |
296 |
tctacgtgtcctataaatgtattaagctatagtattgcaaggttaggaaaagccaagatttgccatcttt |
365 |
Q |
| |
|
|||||||| ||||| |||||||||||| ||||||| ||| | ||||||||||||||||| |||||||| |
|
|
| T |
39403860 |
tctacgtgccctattgatgtattaagctgtagtattacaaaggaaggaaaagccaagatttaccatcttt |
39403929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University