View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_53 (Length: 349)
Name: NF1643_high_53
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_53 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 5867397 - 5867073
Alignment:
| Q |
18 |
ctttcaaactattttggccatgatcttgtcccaatgttgaaggtattgagccactgagcatattatatgatagatcaagtgctacaagattcactagctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5867397 |
ctttcaaactattttggccatgatcttgtcccaatgttgaaggtattgagccactgagcatattatatgatagatcaagtgctacaagattcactagctt |
5867298 |
T |
|
| Q |
118 |
gtcaaagaaatttggtattaaaccattgagactattttttgacagatcaagtattgcaagagttgtcaccctctcaattgaatatgaaatttgaccttgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5867297 |
gtcaaagaaatttggtattaaaccattgagactattttttgacagatcaagtattgcaagagttgtcaccctctcaattgaatatgaaatttgaccttgt |
5867198 |
T |
|
| Q |
218 |
aaattattatttgagagattaaggttttgaaggtgatgacaattttcaaacaaccaatcagggatagtcatattgaaattattgccagacagatcaaggg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5867197 |
aaattattatttgagagattaaggttttgaaggtgatgacaattttcaaacaaccaatcagggatagtcatattgaaattattgccagacagatcaaggg |
5867098 |
T |
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| Q |
318 |
ttacaagagaatcaaaattcatttc |
342 |
Q |
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||||||||||||||||||||||||| |
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| T |
5867097 |
ttacaagagaatcaaaattcatttc |
5867073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 36977674 - 36977998
Alignment:
| Q |
18 |
ctttcaaactattttggccatgatcttgtcccaatgttgaaggtattgagccactgagcatattatatgatagatcaagtgctacaagattcactagctt |
117 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36977674 |
ctttcaaactatttaggccatgatcttgtcccaatgtggaaggtattgagccactgagcatattatatgatagatcaagtgctacaagattcactagcca |
36977773 |
T |
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| Q |
118 |
gtcaaagaaatttggtattaaaccattgagactattttttgacagatcaagtattgcaagagttgtcaccctctcaattgaatatgaaatttgaccttgt |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36977774 |
gtcaaagaaatttggtattgaaccattgagactattttttgacagatcaagtgttgcaagagttgtcaccctctcaattgaatatggaatttgaccttgt |
36977873 |
T |
|
| Q |
218 |
aaattattatttgagagattaaggttttgaaggtgatgacaattttcaaacaaccaatcagggatagtcatattgaaattattgccagacagatcaaggg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36977874 |
aaattattatttgagagattaaggttttgaaggtgatgacaattttcaaacaaccaatcagggatagtcatattgaaattattgccagacagatcaaggg |
36977973 |
T |
|
| Q |
318 |
ttacaagagaatcaaaattcatttc |
342 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
36977974 |
ttacaagagaatcaaaattcatttc |
36977998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 36965935 - 36966257
Alignment:
| Q |
18 |
ctttcaaactattttggccatgatcttgtcccaatgttgaaggtattgagccactgagcatattatatgatagatcaagtgctacaagattcactagctt |
117 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36965935 |
ctttcaaattatttaggccatgatcttgtcccaatgtggaaggtattgagccactgagcatattatatgatagatcaagtgctacaagattcactagcca |
36966034 |
T |
|
| Q |
118 |
gtcaaagaaatttggtattaaaccattgagactattttttgacagatcaagtattgcaagagttgtcaccctctcaattgaatatgaaatttgaccttgt |
217 |
Q |
| |
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||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| | ||| |||||||||||| || |||||||| |
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| T |
36966035 |
gtcaaagaaatttggtattgaaccaatgagactattttttgacagatcaagtatttcaagagttgttaatctcacaattgaatatggtataagaccttgt |
36966134 |
T |
|
| Q |
218 |
aaattattatttgagagattaaggttttgaaggtgatgacaattttcaaacaaccaatcagggatagtcatattgaaattattgccagacagatcaaggg |
317 |
Q |
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|||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||| || ||||||||| |||| |||||||||||| | |
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| T |
36966135 |
aaattattcaatgagagattaagattttgaaggtgatgacacttttcaaacaaccaatcaggg---gtactattgaaataattgatagacagatcaagag |
36966231 |
T |
|
| Q |
318 |
ttacaagagaatcaaaattcatttca |
343 |
Q |
| |
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||||||||||||||||||||| |||| |
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|
| T |
36966232 |
ttacaagagaatcaaaattcacttca |
36966257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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