View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_high_66 (Length: 328)

Name: NF1643_high_66
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_high_66
NF1643_high_66
[»] chr2 (5 HSPs)
chr2 (84-309)||(19054939-19055164)
chr2 (119-184)||(20217864-20217929)
chr2 (119-186)||(29503319-29503386)
chr2 (119-186)||(4438939-4439007)
chr2 (119-186)||(37480123-37480191)
[»] chr8 (4 HSPs)
chr8 (119-184)||(18897214-18897279)
chr8 (119-173)||(35690038-35690092)
chr8 (119-186)||(11793481-11793549)
chr8 (119-186)||(28783108-28783176)
[»] chr4 (3 HSPs)
chr4 (119-186)||(7949414-7949482)
chr4 (119-186)||(32992660-32992728)
chr4 (119-186)||(37274419-37274487)
[»] chr7 (7 HSPs)
chr7 (119-181)||(42712006-42712069)
chr7 (123-186)||(41487411-41487475)
chr7 (119-186)||(2882998-2883065)
chr7 (119-184)||(19553501-19553567)
chr7 (119-184)||(29785263-29785329)
chr7 (119-186)||(21558176-21558244)
chr7 (119-182)||(38374563-38374627)
[»] chr3 (3 HSPs)
chr3 (139-186)||(50731053-50731100)
chr3 (139-186)||(50781754-50781801)
chr3 (119-186)||(44069806-44069874)
[»] chr1 (3 HSPs)
chr1 (119-186)||(17745217-17745284)
chr1 (119-181)||(43446011-43446074)
chr1 (126-186)||(23398995-23399056)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 84 - 309
Target Start/End: Original strand, 19054939 - 19055164
Alignment:
Q  84 ctcattaatttaaaattgtaaaataataataaggagctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggctatttagcttct 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19054939 ctcattaatttaaaattgtaaaataataataaggagctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggctatttagcttct 19055038  T
Q  184 tcagtcgcatttgatcataattttaacaaagtgaggaattttgatggcgaatgtgaccctagataattattgatggagtctatgaaagaacaagaaaact 283  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19055039 tcagtcgcatttgatgataattttaacaaagtgaggaattttgatggtgaatgtgaccctagataattattgatggagtctatgaaagaacaagaaaact 19055138  T
Q  284 taatataaaagagtaaacatgcatag 309  Q
    ||||||||||||||||||||||||||    
T  19055139 taatataaaagagtaaacatgcatag 19055164  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 20217864 - 20217929
Alignment:
Q  119 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggctatttagcttctt 184  Q
    ||||||||||||||||| | |||||||||||||  ||  |||||| ||||||||||||||||||||    
T  20217864 gctcctcctcaaggtcttaggttcgattcttccatgtgccaatttgagtgggctatttagcttctt 20217929  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 29503319 - 29503386
Alignment:
Q  119 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggc-tatttagcttcttca 186  Q
    ||||||||||||||||| | ||||||||| ||| ||| |||||||||||||||  ||||||||||||||    
T  29503319 gctcctcctcaaggtctcaggttcgattc-tcccggtgtcaatttaagtgggcaaatttagcttcttca 29503386  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 4439007 - 4438939
Alignment:
Q  119 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggcta-tttagcttcttca 186  Q
    ||||||||||||||||  ||||||||||||| |||||  |||||| || ||| || |||||||||||||    
T  4439007 gctcctcctcaaggtcgcatgttcgattctttctggtaccaatttgagagggttagtttagcttcttca 4438939  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 37480123 - 37480191
Alignment:
Q  119 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggct-atttagcttcttca 186  Q
    ||||||||||||||||| | |||||||||| || |||  ||||||  ||||||| ||||||||||||||    
T  37480123 gctcctcctcaaggtctcaggttcgattctccccggtcccaatttgggtgggctaatttagcttcttca 37480191  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 18897214 - 18897279
Alignment:
Q  119 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggctatttagcttctt 184  Q
    ||||||||||||||||| |||||||||||||||||||  ||||||| ||||| |||||||||||||    
T  18897214 gctcctcctcaaggtctcatgttcgattcttcctggtgccaatttaggtgggatatttagcttctt 18897279  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 35690092 - 35690038
Alignment:
Q  119 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggcta 173  Q
    ||||||||||||||||| | ||||||||||  ||||| ||||||||||| |||||    
T  35690092 gctcctcctcaaggtctcaggttcgattctctctggtgtcaatttaagtaggcta 35690038  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 11793549 - 11793481
Alignment:
Q  119 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggcta-tttagcttcttca 186  Q
    ||||||||||||||||| | ||| ||||||||| |||  ||||||  |||||||| |||||||||||||    
T  11793549 gctcctcctcaaggtcttaggtttgattcttcccggtgccaatttgggtgggctagtttagcttcttca 11793481  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 28783108 - 28783176
Alignment:
Q  119 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggct-atttagcttcttca 186  Q
    ||||||||||||||||| |||||||||||| |  |||  ||||||  ||||||| ||||||||||||||    
T  28783108 gctcctcctcaaggtctcatgttcgattctcctcggtgccaatttgggtgggctaatttagcttcttca 28783176  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 7949482 - 7949414
Alignment:
Q  119 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggct-atttagcttcttca 186  Q
    ||||||||||||||||| | ||||||||||  ||||| |||||||| ||||||| ||||||||||||||    
T  7949482 gctcctcctcaaggtctcaggttcgattctctctggtgtcaatttaggtgggctaatttagcttcttca 7949414  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 32992660 - 32992728
Alignment:
Q  119 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggcta-tttagcttcttca 186  Q
    ||||||||||||||||| | |||||||||| || ||| ||||||| ||||| ||| |||||||||||||    
T  32992660 gctcctcctcaaggtctcaagttcgattctccccggtgtcaatttgagtggactagtttagcttcttca 32992728  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 37274487 - 37274419
Alignment:
Q  119 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggct-atttagcttcttca 186  Q
    ||||||||||||||||| | ||||||||||  |||||   |||||||||||||| ||||||||||||||    
T  37274487 gctcctcctcaaggtcttaggttcgattctctctggtgctaatttaagtgggctaatttagcttcttca 37274419  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 42712006 - 42712069
Alignment:
Q  119 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggct-atttagctt 181  Q
    ||||||||||||||||| |||||||||||| ||| || |||||||| ||||||| |||||||||    
T  42712006 gctcctcctcaaggtctcatgttcgattctccctagtgtcaatttaggtgggctaatttagctt 42712069  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 41487411 - 41487475
Alignment:
Q  123 ctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggct-atttagcttcttca 186  Q
    ||||||||||||| | ||||||||||||| |||  ||||||| ||||||| ||||||||||||||    
T  41487411 ctcctcaaggtctcaggttcgattcttcccggtgccaatttaggtgggctaatttagcttcttca 41487475  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 2882998 - 2883065
Alignment:
Q  119 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggctatttagcttcttca 186  Q
    ||||||||||||||||| | |||| |||||  |||||  ||||||| |||||||| ||||||||||||    
T  2882998 gctcctcctcaaggtctcaggttcaattctctctggtggcaatttaggtgggctacttagcttcttca 2883065  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 19553501 - 19553567
Alignment:
Q  119 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggcta-tttagcttctt 184  Q
    ||||||||||||||||| | |||| ||||| || |||| ||||||| |||||||| |||||||||||    
T  19553501 gctcctcctcaaggtcttaggttcaattctccccggttccaatttaggtgggctactttagcttctt 19553567  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 29785329 - 29785263
Alignment:
Q  119 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggcta-tttagcttctt 184  Q
    ||||||||||||||||| ||||||||||||| |||||  |||||| || ||| || |||||||||||    
T  29785329 gctcctcctcaaggtctcatgttcgattctttctggtgccaatttgagggggttagtttagcttctt 29785263  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 21558176 - 21558244
Alignment:
Q  119 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggct-atttagcttcttca 186  Q
    ||||||||||||||||| | ||||||||||  |||||  ||||||| ||||| | ||||||||||||||    
T  21558176 gctcctcctcaaggtctcaggttcgattctctctggtgccaatttaggtgggttaatttagcttcttca 21558244  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 38374627 - 38374563
Alignment:
Q  119 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggcta-tttagcttc 182  Q
    ||||||||||||||||| | |||||||||| || |||  ||||||| |||||||| |||||||||    
T  38374627 gctcctcctcaaggtcttaggttcgattctccccggtgccaatttaggtgggctagtttagcttc 38374563  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 50731100 - 50731053
Alignment:
Q  139 gttcgattcttcctggtttcaatttaagtgggctatttagcttcttca 186  Q
    ||||||||||| ||||| ||||||| | ||||||||||||||||||||    
T  50731100 gttcgattcttactggtgtcaatttgaatgggctatttagcttcttca 50731053  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 50781754 - 50781801
Alignment:
Q  139 gttcgattcttcctggtttcaatttaagtgggctatttagcttcttca 186  Q
    ||||||||||| ||||| ||||||| | ||||||||||||||||||||    
T  50781754 gttcgattcttactggtgtcaatttgaatgggctatttagcttcttca 50781801  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 44069806 - 44069874
Alignment:
Q  119 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggcta-tttagcttcttca 186  Q
    ||||||||||||||||| | ||| ||||||| | |||  ||||||| |||||||| |||||||||||||    
T  44069806 gctcctcctcaaggtctcaggtttgattctttccggtgccaatttaggtgggctagtttagcttcttca 44069874  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 17745284 - 17745217
Alignment:
Q  119 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggctatttagcttcttca 186  Q
    |||||||||| |||||| ||||||||||||  ||||| |||||||| ||||   ||||||||||||||    
T  17745284 gctcctcctcgaggtctcatgttcgattctctctggtgtcaatttaggtggttaatttagcttcttca 17745217  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 43446011 - 43446074
Alignment:
Q  119 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggcta-tttagctt 181  Q
    ||||||||||||||||| |||||||||||| || |||  |||||| ||||||||| ||||||||    
T  43446011 gctcctcctcaaggtctcatgttcgattctccccggtgccaatttgagtgggctagtttagctt 43446074  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 23398995 - 23399056
Alignment:
Q  126 ctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggct-atttagcttcttca 186  Q
    |||||||||| | ||||||||||||||  | |||||||||||||| | ||||||||||||||    
T  23398995 ctcaaggtctcaagttcgattcttccttatgtcaatttaagtgggttcatttagcttcttca 23399056  T

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