View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_67 (Length: 327)
Name: NF1643_high_67
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_67 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 40289191 - 40288859
Alignment:
| Q |
17 |
tatcaatcaaactcactttgatgcattaggttcttcattaacctttgttgaaccaatacaatatttgatcttattcaacacgtaaaaca----------- |
105 |
Q |
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| T |
40289191 |
tatcaaccaaactcactttgatgcattaggttcttcattaacctttgttgaaccaatacaatatttgatcttattcaacacgtaaaacacaaaaaaaaaa |
40289092 |
T |
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| Q |
106 |
---------ttctcaacttttaattttcattctaagtaacatagatagttcaaattcaacgttcatcagaacgcacagtgc--acgttagcaaaacagat |
194 |
Q |
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| T |
40289091 |
aaatgagtattctcaacttttaattttcattctaagtaacatagatggttcaaattcaacgttcatcagaacgcacagtgcgcacgttagcaaaacagat |
40288992 |
T |
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| Q |
195 |
aatactttgctattgtacacttttcatttcacaacacaaaaatttcaagcattgaaatgagagagaaaacgaaactcacgaggatcttagcggcgagaga |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40288991 |
aatactttgctattgtacacttttcatttcacaacacaaaaatttcaagcattgaaatgagagagaaaacgaaactcacgaggatcttagcggcgagaga |
40288892 |
T |
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| Q |
295 |
gtgagaaggaccacggtgagaaagcgaattaag |
327 |
Q |
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| T |
40288891 |
gtgagaaggaccacggtgagaaagcgaattaag |
40288859 |
T |
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