View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_high_69 (Length: 325)

Name: NF1643_high_69
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_high_69
NF1643_high_69
[»] chr3 (4 HSPs)
chr3 (7-307)||(47451470-47451770)
chr3 (61-307)||(11015115-11015355)
chr3 (61-307)||(11005552-11005792)
chr3 (67-299)||(11024133-11024359)
[»] chr4 (33 HSPs)
chr4 (7-270)||(45365790-45366053)
chr4 (47-235)||(49043778-49043960)
chr4 (7-285)||(48852900-48853172)
chr4 (59-197)||(7790381-7790519)
chr4 (7-215)||(48870843-48871051)
chr4 (7-215)||(48876147-48876355)
chr4 (7-269)||(45384460-45384730)
chr4 (61-215)||(48886529-48886683)
chr4 (7-196)||(48155999-48156188)
chr4 (59-199)||(7773447-7773587)
chr4 (7-203)||(48899035-48899231)
chr4 (57-284)||(48147333-48147560)
chr4 (59-197)||(7771696-7771834)
chr4 (57-138)||(49038498-49038579)
chr4 (7-194)||(7237313-7237500)
chr4 (7-137)||(7908663-7908793)
chr4 (76-199)||(7765941-7766064)
chr4 (59-149)||(7878732-7878822)
chr4 (59-307)||(45371696-45371938)
chr4 (79-231)||(37826632-37826784)
chr4 (76-199)||(7786763-7786886)
chr4 (67-138)||(48864395-48864466)
chr4 (67-137)||(7813838-7813908)
chr4 (58-146)||(49048176-49048264)
chr4 (94-215)||(48903241-48903359)
chr4 (67-137)||(7800998-7801068)
chr4 (167-203)||(50669380-50669416)
chr4 (166-228)||(43596154-43596216)
chr4 (114-196)||(50250403-50250485)
chr4 (166-199)||(7878045-7878078)
chr4 (242-307)||(49043994-49044059)
chr4 (67-135)||(7823332-7823400)
chr4 (223-307)||(49048361-49048445)
[»] chr5 (4 HSPs)
chr5 (61-215)||(9120046-9120200)
chr5 (93-226)||(179330-179463)
chr5 (45-149)||(29688478-29688582)
chr5 (7-138)||(42561906-42562034)
[»] chr6 (1 HSPs)
chr6 (58-307)||(21016018-21016261)
[»] chr8 (6 HSPs)
chr8 (66-203)||(15349178-15349315)
chr8 (109-199)||(4962191-4962281)
chr8 (166-199)||(12200641-12200674)
chr8 (166-199)||(12445069-12445102)
chr8 (94-142)||(4031583-4031631)
chr8 (244-307)||(4031710-4031773)
[»] chr7 (1 HSPs)
chr7 (76-146)||(48884176-48884246)
[»] chr1 (2 HSPs)
chr1 (107-144)||(24310570-24310607)
chr1 (108-144)||(24416132-24416168)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 47451470 - 47451770
Alignment:
Q  7 tccaagaatatcaccactttttgtagaggttaaggggtaaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaatta 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47451470 tccaataatatcaccactttttgtagaggttaaggggtaaaagtactgagagggaatgccatcaataggaagaacaagagtcttttcccaagacgaatta 47451569  T
Q  107 actttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccacaaaccacaattgg 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  47451570 actttgtattctttcatcacccatatttcaactatatcattatgacaatccagaacccttagactaagaaattctccaaatacccacaaaccacaattgg 47451669  T
Q  207 taggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctttccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47451670 taggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctttccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaa 47451769  T
Q  307 a 307  Q
    |    
T  47451770 a 47451770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 61 - 307
Target Start/End: Original strand, 11015115 - 11015355
Alignment:
Q  61 aatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccaca 160  Q
    |||| |||||||||| || |||||||| ||  ||||||||||||  ||||||||||||||||| ||||||||||||||| |  |||  |      ||| |    
T  11015115 aatgtcatcaatagataggacaagagttttaacccaagacgaatgcactttgtattctttcataacccatatttcaactgttccatcct------ccata 11015208  T
Q  161 acccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctttcca 260  Q
     ||| |||||| |||||||||||||||| ||||||| ||||||   ||||||||| ||||||| ||||||| |||| ||  || |||| ||| |||||||    
T  11015209 gcccatagacttagaaattctccaaatatccacaaatcacaatctataggttcatagtcaaaaccatctggaaaatgcatctccaaaagtttcctttcca 11015308  T
Q  261 ttaaatcaaatgcagcaataacattcatggatatatcatgacgaaaa 307  Q
     |||||||||  || ||||||||| ||| |||| |||||| ||||||    
T  11015309 ctaaatcaaagccaacaataacatccattgataaatcatggcgaaaa 11015355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 61 - 307
Target Start/End: Original strand, 11005552 - 11005792
Alignment:
Q  61 aatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccaca 160  Q
    ||||||||||||||| |  ||||||| |||   |||||||||||  ||||||||||||||||| ||||||||||||| | | ||||         ||| |    
T  11005552 aatgccatcaatagataagacaagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatccc------ccata 11005645  T
Q  161 acccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctttcca 260  Q
     ||| ||||||||||||||||||||||| ||||||| ||||||   |||||||||| |||||| ||| ||| |||  ||  ||||||| ||| |||||||    
T  11005646 gcccatagactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatatggaaaaggcatctctaaaagtttcctttcca 11005745  T
Q  261 ttaaatcaaatgcagcaataacattcatggatatatcatgacgaaaa 307  Q
     |||||||||  || ||||||||| ||| || | |||||| ||||||    
T  11005746 ctaaatcaaagccaacaataacatccattgacaaatcatggcgaaaa 11005792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 67 - 299
Target Start/End: Original strand, 11024133 - 11024359
Alignment:
Q  67 atcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaaccctt 166  Q
    ||||||||| || |||||||||||   |||||||||||  ||||||||||||||||| ||||||||||||| | |  |      ||   ||| | ||| |    
T  11024133 atcaatagataggacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgttac------accccccatagcccat 11024226  T
Q  167 agactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctttccattaaat 266  Q
    ||||| |||||||||||||||| ||||||| ||||||   |||||||||| |||||| ||||||| |||  ||  || |||| ||  ||||||| |||||    
T  11024227 agactgagaaattctccaaatatccacaaatcacaatccataggttcatgatcaaaaccatctggaaaaggcatctccaaaagttccctttccactaaat 11024326  T
Q  267 caaatgcagcaataacattcatggatatatcat 299  Q
    |||| |||  |||||||| ||| |||| |||||    
T  11024327 caaaggcaataataacatccattgataaatcat 11024359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 7 - 270
Target Start/End: Original strand, 45365790 - 45366053
Alignment:
Q  7 tccaagaatatcaccactttttgtagaggttaaggggtaaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaatta 106  Q
    ||||| ||||||||| ||||||||||||  ||| ||| ||||||| |||| ||||||||||||||||| ||||||  ||||||||  ||||||||||       
T  45365790 tccaataatatcaccgctttttgtagagcataaaggggaaaagtattgagtgggaatgccatcaataggaagaacgtgagtctttgtccaagacgaacgc 45365889  T
Q  107 actttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccacaaaccacaattgg 206  Q
    ||||| ||||||||||||||||||||||||||| ||||||||| | |||||| | |||  | ||| | ||||||||||||||||||||||||||||| |     
T  45365890 actttatattctttcatcacccatatttcaactgtatcattatcataatccatagcccaaaaactgaaaaattctccaaatacccacaaaccacaatcgt 45365989  T
Q  207 taggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctttccattaaatcaaa 270  Q
     ||||||| ||| ||| |||||||| ||||  | ||  |||| ||| ||||| |||||||||||    
T  45365990 gaggttcacggttaaactcatctggaaaatgaatataaaaaagtttcctttcgattaaatcaaa 45366053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 47 - 235
Target Start/End: Original strand, 49043778 - 49043960
Alignment:
Q  47 aagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcat 146  Q
    |||||||||| ||||||| |||||||||||| ||||||||||||   ||| |||||||  ||||||||||||||||||||||||||||||||||||||||    
T  49043778 aagtaatgagtgggaatgacatcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaactatatcat 49043877  T
Q  147 tatgac-aatccacaacccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaa 235  Q
    | || | | ||||       || |||||||| ||| ||||||||||||||| ||||||  ||||||||||| ||||||||| ||||||||    
T  49043878 tctgtctagtcca-------tacactaagaagttcaccaaatacccacaaatcacaatctgtaggttcatgttcaaaatcacctggcaaa 49043960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 285
Target Start/End: Complemental strand, 48853172 - 48852900
Alignment:
Q  7 tccaagaatatcaccactttttgtagaggttaaggggtaaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaatta 106  Q
    ||||| |||||||||||| |||||| |   ||  ||| ||||||| |||| |||||||  |  || ||||||||||||||||||   ||||||||||       
T  48853172 tccaataatatcaccactctttgtacaacatattggggaaaagtagtgagtgggaatggaactaaaagaaagaacaagagtcttagtccaagacgaacgc 48853073  T
Q  107 actttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccacaaaccacaattgg 206  Q
    ||||||||||||||||| ||||||||||||||| ||||||         |||  |||| || ||| |||||||||| ||||||||||||| | |||| ||    
T  48853072 actttgtattctttcatgacccatatttcaactgtatcatccc------ccatgacccatatacttagaaattctctaaatacccacaaatcgcaatagg 48852979  T
Q  207 taggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctttccattaaatcaaatgcagcaataacatt 285  Q
    |||||||||||| ||||||||| ||||||  ||  ||||||| ||| ||||||||||||||||| ||  ||||||||||    
T  48852978 taggttcatggtaaaaatcatccggcaaagacaactctaaaagtttcctttccattaaatcaaaggccacaataacatt 48852900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 59 - 197
Target Start/End: Complemental strand, 7790519 - 7790381
Alignment:
Q  59 ggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatcca 158  Q
    |||||| |||||||||||||||||||||| ||   |||||||||||  ||||||||||||||||||||||||||||||| | ||||||||| | |||||     
T  7790519 ggaatggcatcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatcattatcataatcct 7790420  T
Q  159 caacccttagactaagaaattctccaaatacccacaaac 197  Q
     | | | || ||| |||||||||||||||||||||||||    
T  7790419 tagcgcataaactgagaaattctccaaatacccacaaac 7790381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 48871051 - 48870843
Alignment:
Q  7 tccaagaatatcaccactttttgtagaggttaaggggtaaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaatta 106  Q
    ||||| ||||||||||||||||||| ||   || ||| ||||| | | |  || |||| |||||| |||||||||||||||||||  ||||||||| ||     
T  48871051 tccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttc 48870952  T
Q  107 actttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccacaaaccacaattgg 206  Q
    ||||||||||| ||||||||||| ||||||| | ||| || || | |||||| | |   |||||| |||||||| |||||||||||||||||||| |||     
T  48870951 actttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaatacccacaaaccacagttgt 48870852  T
Q  207 taggttcat 215  Q
    |||| ||||    
T  48870851 taggatcat 48870843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 48876355 - 48876147
Alignment:
Q  7 tccaagaatatcaccactttttgtagaggttaaggggtaaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaatta 106  Q
    ||||| ||||||||||||||||||| ||   || ||| ||||| | | |  || |||| |||||| |||||||||||||||||||  ||||||||| ||     
T  48876355 tccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttc 48876256  T
Q  107 actttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccacaaaccacaattgg 206  Q
    ||||||||||| ||||||||||| ||||||| | ||| || || | |||||| | |   |||||| |||||||| |||||||||||||||||||| |||     
T  48876255 actttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaatacccacaaaccacagttgt 48876156  T
Q  207 taggttcat 215  Q
    |||| ||||    
T  48876155 taggatcat 48876147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 269
Target Start/End: Original strand, 45384460 - 45384730
Alignment:
Q  7 tccaagaatatcaccactttttgtagaggttaaggggtaaaagtaatgagagggaatg--ccatcaatagaaagaacaagagtcttttcccaagacgaat 104  Q
    ||||| ||||||||| ||||||||||||  ||| ||| ||| | |  |||| |||||   ||||||| || ||||||| ||||||||  |||||||||||    
T  45384460 tccaataatatcaccgctttttgtagagcataaaggggaaagggatagagaaggaatataccatcaaaaggaagaacacgagtctttgtccaagacgaat 45384559  T
Q  105 taactttgtattctttcatcacccatatttcaact---atatca---ttatgacaatccacaacccttagactaagaaattctccaaatacccacaaacc 198  Q
      ||||| |||||||||||||||||||||||||||   |||| |   |||| | ||| || | | |  | ||| ||||||||||||||||||||||||||    
T  45384560 gcactttatattctttcatcacccatatttcaactgaaatattaatattatcataatgcatagctcaaaaactgagaaattctccaaatacccacaaacc 45384659  T
Q  199 acaattggtaggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctttccattaaatcaa 269  Q
    ||||| |||||||||| ||| ||| ||||||||||||| || ||  |||| |||  |||| ||||||||||    
T  45384660 acaatcggtaggttcacggttaaactcatctggcaaatgcatataaaaaagtttcatttcgattaaatcaa 45384730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 61 - 215
Target Start/End: Complemental strand, 48886683 - 48886529
Alignment:
Q  61 aatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccaca 160  Q
    |||| |||||| |||||||||||||||||||  ||||||||| || ||||||||||| ||||||||||| ||||||| | ||| || || | |||||| |    
T  48886683 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccata 48886584  T
Q  161 acccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcat 215  Q
     |   |||||| |||||||| |||||||||||||||||||| ||| |||| ||||    
T  48886583 gcatatagactgagaaattccccaaatacccacaaaccacagttgttaggatcat 48886529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 48155999 - 48156188
Alignment:
Q  7 tccaagaatatcaccactttttgtagaggttaaggggtaaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaatta 106  Q
    ||||| ||| |||||| |||||||||||  ||  ||||||||| || |||    |||||||||||||| ||| |||||||| ||   |||||| ||||      
T  48155999 tccaacaatgtcaccattttttgtagagcatattgggtaaaaggaaagagtataaatgccatcaataggaaggacaagagttttagtccaagaagaatgc 48156098  T
Q  107 actttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccacaaa 196  Q
    ||||||||||| ||||||||||||||||||||| | ||||||   ||||| ||| ||| || ||| ||||||||||||||||||||||||    
T  48156099 actttgtattcgttcatcacccatatttcaactctttcattagcccaatcaacagcccataaactgagaaattctccaaatacccacaaa 48156188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 59 - 199
Target Start/End: Original strand, 7773447 - 7773587
Alignment:
Q  59 ggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatcca 158  Q
    |||||| | |||| ||||||||||||||  ||   |||||||||||  ||||||||||||||||||||||||||||||||| ||||||||  |  ||||     
T  7773447 ggaatggcttcaacagaaagaacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatcct 7773546  T
Q  159 caacccttagactaagaaattctccaaatacccacaaacca 199  Q
     | ||| || ||||||| |||||||||||||||||||||||    
T  7773547 tagcccatacactaagatattctccaaatacccacaaacca 7773587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 48899231 - 48899035
Alignment:
Q  7 tccaagaatatcaccactttttgtagaggttaaggggtaaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaatta 106  Q
    ||||| |||||  |||||||||||| ||   || |||||||||||   || ||||||||||||||||| |||||||||||||  |  |||||| || ||     
T  48899231 tccaataatatagccactttttgtacagcacaatgggtaaaagtacatagtgggaatgccatcaataggaagaacaagagtcactgtccaagaggatttt 48899132  T
Q  107 actttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccacaaaccacaat 203  Q
    ||||| ||||||||||||||||||||||||||| ||||||||  | |||   || ||| || ||| | ||| |||||||| ||||||||||||||||    
T  48899131 actttatattctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaat 48899035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 57 - 284
Target Start/End: Original strand, 48147333 - 48147560
Alignment:
Q  57 agggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatc 156  Q
    ||||||||||||||||||| | |  |||||||||   |||||||||||  ||||||||||||||||||||||||||||||||| |   ||| | |  |||    
T  48147333 agggaatgccatcaatagacaaattaagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactctgctattgtcatgatc 48147432  T
Q  157 cacaacccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctt 256  Q
    || | || ||||||| ||||||| ||||||||||||||||  || ||    || |||| || ||||| ||||||| |||  ||  ||||||| | | |||    
T  48147433 catacccgttagactgagaaattgtccaaatacccacaaatgactatattcagattcaaggccaaaaccatctggaaaaggcatctctaaaagtctcctt 48147532  T
Q  257 tccattaaatcaaatgcagcaataacat 284  Q
    ||||||||||||||||||  ||||||||    
T  48147533 tccattaaatcaaatgcaataataacat 48147560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 197
Target Start/End: Complemental strand, 7771834 - 7771696
Alignment:
Q  59 ggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatcca 158  Q
    |||||| |||||| ||||||||||||||| ||   ||| |||||||  ||||||||||||||||||||||||||| ||| | ||||||||| | |||||     
T  7771834 ggaatggcatcaacagaaagaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatattacaattgtatcattatcataatcct 7771735  T
Q  159 caacccttagactaagaaattctccaaatacccacaaac 197  Q
     | | | || ||| |||||||||||||||||||||||||    
T  7771734 tagcgcataaactgagaaattctccaaatacccacaaac 7771696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 49038498 - 49038579
Alignment:
Q  57 agggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaac 138  Q
    |||||||||||  |||||| ||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||    
T  49038498 agggaatgccactaatagacagaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 7 - 194
Target Start/End: Original strand, 7237313 - 7237500
Alignment:
Q  7 tccaagaatatcaccactttttgtagaggttaaggggtaaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaatta 106  Q
    ||||| |||||||||| |||||||||||  ||  |||| |||||| |||   ||||||| || || || ||| |||||||| ||   |||| ||||||      
T  7237313 tccaataatatcaccattttttgtagagtgtatagggtgaaagtagtgaccaggaatgcgatgaagaggaagcacaagagttttagtccaaaacgaatgc 7237412  T
Q  107 actttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccaca 194  Q
    | ||||||||||||||||||||||||| ||| | ||||||||| | |||||  | ||| |||||| ||||||||||||||||||||||    
T  7237413 attttgtattctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaattctccaaatacccaca 7237500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 7908793 - 7908663
Alignment:
Q  7 tccaagaatatcaccactttttgtagaggttaaggggtaaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaatta 106  Q
    ||||| |||||||||  |||||||||||  ||  |||| |||||| |||   |||||| |||||| ||||||||||||||| || | |||||| ||||      
T  7908793 tccaataatatcaccgttttttgtagagtgtatagggtgaaagtagtgatcaggaatggcatcaacagaaagaacaagagttttattccaagatgaatgc 7908694  T
Q  107 actttgtattctttcatcacccatatttcaa 137  Q
    |||||||||||||||||||||||||||||||    
T  7908693 actttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 7766064 - 7765941
Alignment:
Q  76 aagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaaga 175  Q
    ||||||||| |||||   ||| |||||||  ||||||||||||||||||||||||||||||| | ||||||||  |  ||||  ||||| || ||| |||    
T  7766064 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgaga 7765965  T
Q  176 aattctccaaatacccacaaacca 199  Q
    ||||||||| ||||||||||||||    
T  7765964 aattctccagatacccacaaacca 7765941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 7878822 - 7878732
Alignment:
Q  59 ggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattat 149  Q
    |||||| ||||||  |||||||||||||| ||   |||||| ||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  7878822 ggaatgacatcaaccgaaagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcattat 7878732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 307
Target Start/End: Original strand, 45371696 - 45371938
Alignment:
Q  59 ggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatcca 158  Q
    |||| |||||| |||| |||||||| ||||||   |||||||||||  ||||||||||||||||| ||||||||||||||| |||| |        | |     
T  45371696 ggaacgccatcgataggaagaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgtatctt------ccttct 45371789  T
Q  159 caacccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctttc 258  Q
     | |||  ||||| ||||||| ||| |||||||| ||| ||||||  |||||  || |||||||| |||| ||||||  ||  ||||||| ||| | |||    
T  45371790 tagcccaaagactgagaaattttccgaatacccaaaaatcacaatatgtaggaccagggtcaaaaccatcaggcaaagacatctctaaaagtttccgttc 45371889  T
Q  259 cattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaa 307  Q
    |||||||||||| |||  ||||||| |||| |||| |||||||||||||    
T  45371890 cattaaatcaaaggcaagaataacactcatcgataaatcatgacgaaaa 45371938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 231
Target Start/End: Original strand, 37826632 - 37826784
Alignment:
Q  79 aacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaat 178  Q
    ||||||||||||   |||||||||||  | |||||||||||||||||||| || || || | ||| ||||| ||   |||   ||| |||||||||||||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccgtaatttaagtgtatgattataactgcccatggcccatagactaagaaat 37826731  T
Q  179 tctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctgg 231  Q
    ||||||||||||||||||||| |||  | ||| |||| || ||||||||||||    
T  37826732 tctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctgg 37826784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 7786886 - 7786763
Alignment:
Q  76 aagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaaga 175  Q
    ||||||||||||||| | ||||||  |||  || |||||||||||||||||||||||||||| | ||||||||  |  ||||  ||||| || ||| |||    
T  7786886 aagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgaga 7786787  T
Q  176 aattctccaaatacccacaaacca 199  Q
    ||||| ||| ||||||||||||||    
T  7786786 aattccccagatacccacaaacca 7786763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 48864466 - 48864395
Alignment:
Q  67 atcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaac 138  Q
    |||||||| |||||||||| ||||   |||||||||||  ||||||||||||||||||||||||||||||||    
T  48864466 atcaataggaagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 7813908 - 7813838
Alignment:
Q  67 atcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaa 137  Q
    ||||| ||||||||||||||| || | |||||||||||  |||||||||||||||| ||||||||||||||    
T  7813908 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 49048176 - 49048264
Alignment:
Q  58 gggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcat 146  Q
    ||||||| ||||| |||||| ||||| ||||||   ||| |||||||  ||||| || |||||||||||||||||||||||||||||||    
T  49048176 gggaatgacatcagtagaaaaaacaaaagtcttagtccatgacgaatgcactttatactctttcatcacccatatttcaactatatcat 49048264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 48903359 - 48903241
Alignment:
Q  94 ccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccac 193  Q
    ||||||| |||  ||||||||||||||||||||||||||||||| |   | |||||   |||||| | ||| ||| |||||||||||||||||||||||     
T  48903359 ccaagacaaatgcactttgtattctttcatcacccatatttcaaat---ttattatcgtaatccaaagcccataggctaagaaattctccaaatacccat 48903263  T
Q  194 aaaccacaattggtaggttcat 215  Q
    ||| |||| || |||| |||||    
T  48903262 aaatcacactttgtagattcat 48903241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 7801068 - 7800998
Alignment:
Q  67 atcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaa 137  Q
    ||||| ||||||||||||||| || | |||||||||||  |||||||| ||||||| ||||||||||||||    
T  7801068 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 50669416 - 50669380
Alignment:
Q  167 agactaagaaattctccaaatacccacaaaccacaat 203  Q
    ||||| |||||||||||||||||||||||||||||||    
T  50669416 agactgagaaattctccaaatacccacaaaccacaat 50669380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 43596154 - 43596216
Alignment:
Q  166 tagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatc 228  Q
    ||||||||||||||| ||||||||||||| | |||||||  |||| |||| ||||||| ||||    
T  43596154 tagactaagaaattccccaaatacccacatatcacaatttttaggatcatagtcaaaaccatc 43596216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 50250403 - 50250485
Alignment:
Q  114 attctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccacaaa 196  Q
    |||||||||||||||||||||||  | || |||| ||| ||||  || ||  |||||| |||| |||||||||||||||||||    
T  50250403 attctttcatcacccatatttcagttgtaccattctgaaaatcaccacccaatagactgagaatttctccaaatacccacaaa 50250485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 7878078 - 7878045
Alignment:
Q  166 tagactaagaaattctccaaatacccacaaacca 199  Q
    |||||| |||||||||||||||||||||||||||    
T  7878078 tagactgagaaattctccaaatacccacaaacca 7878045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 49043994 - 49044059
Alignment:
Q  242 tctaaaaattttctttccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaa 307  Q
    ||||||| ||| ||||| ||||||||||| ||| ||||||||||||| |||| |||| || |||||    
T  49043994 tctaaaagtttcctttcaattaaatcaaaggcaacaataacattcattgataaatcaagatgaaaa 49044059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 7823400 - 7823332
Alignment:
Q  67 atcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttc 135  Q
    ||||| ||||||||||||||| || | ||||||| |||  |||||||| ||||| | ||||||||||||    
T  7823400 atcaacagaaagaacaagagttttattccaagacaaatgcactttgtaatctttaaacacccatatttc 7823332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 307
Target Start/End: Original strand, 49048361 - 49048445
Alignment:
Q  223 atcatctggcaaattcacatctaaaaattttctttccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaa 307  Q
    ||||||||||| |  || ||||| ||  ||||||||| |||||||||| ||| ||||||||||||| |||| |||| || |||||    
T  49048361 atcatctggcagagacatatctacaaggtttctttccgttaaatcaaaggcaacaataacattcatcgataaatcaagatgaaaa 49048445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 61 - 215
Target Start/End: Complemental strand, 9120200 - 9120046
Alignment:
Q  61 aatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccaca 160  Q
    |||||| |||||||| | ||||||||| || | |||||| ||||  ||||||||||||||||||||||||||||||||| ||||||||  | |||||| |    
T  9120200 aatgccgtcaatagacaaaacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaaatccata 9120101  T
Q  161 acccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcat 215  Q
     ||| || ||| |||||||||||||||||||||| | ||||||| |||| |||||    
T  9120100 gcccatatactgagaaattctccaaatacccacacatcacaatttgtagcttcat 9120046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 226
Target Start/End: Complemental strand, 179463 - 179330
Alignment:
Q  93 cccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaataccca 192  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||| ||||||||| | |||||| | ||| || ||| ||||||| ||||||||||||    
T  179463 cccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcattatcataatccatagcccatatactgagaaattgtccaaataccca 179364  T
Q  193 caaaccacaattggtaggttcatggtcaaaatca 226  Q
     | | ||||||| |||| ||||| ||||| ||||    
T  179363 tacatcacaatttgtagcttcatagtcaatatca 179330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 29688582 - 29688478
Alignment:
Q  45 aaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatc 144  Q
    ||||||| |||  ||||||| || ||| ||||||||| |||||||||  ||||||||| |  || ||||||| |||||||||||||||||||||| || |    
T  29688582 aaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaactgtacc 29688483  T
Q  145 attat 149  Q
    |||||    
T  29688482 attat 29688478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 42561906 - 42562034
Alignment:
Q  7 tccaagaatatcaccactttttgtagaggttaaggggtaaaagtaatgagagggaatgccatca---atagaaagaacaagagtcttttcccaagacgaa 103  Q
    ||||| |||||||||| |||||||| ||| ||| ||| |||||||      ||||||| |||||   |||| |||||||||| ||||   |||||| |||    
T  42561906 tccaataatatcaccattttttgtataggataaagggcaaaagta------gggaatgtcatcataaataggaagaacaagaatcttagtccaagatgaa 42561999  T
Q  104 ttaactttgtattctttcatcacccatatttcaac 138  Q
    |  |||||||||||||||||||||||||| |||||    
T  42562000 tgcactttgtattctttcatcacccatatatcaac 42562034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 58 - 307
Target Start/End: Complemental strand, 21016261 - 21016018
Alignment:
Q  58 gggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatcc 157  Q
    ||||||| |||||||||| | |  |||||||||   |||||||||||  ||||||||||||||||| ||||||||||||||||||||      || ||||    
T  21016261 gggaatgtcatcaatagagaaagtaagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttcaactatatc------actatcc 21016168  T
Q  158 acaacccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaattcacatctaaaaattttcttt 257  Q
    | |  || || ||| | |||||| || |||||||||||| ||||||   |||||||||| || | |||||| ||||||  ||  || |||| ||||||||    
T  21016167 atagtccatacactcaaaaattcaccgaatacccacaaatcacaatatataggttcatgttccatatcatccggcaaagacatgtcgaaaagttttcttt 21016068  T
Q  258 ccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaa 307  Q
    | || |||||||| |||   ||||| ||||| |||| |||||||||||||    
T  21016067 ctatcaaatcaaaggcaatgataactttcattgataaatcatgacgaaaa 21016018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 203
Target Start/End: Complemental strand, 15349315 - 15349178
Alignment:
Q  66 catcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaaccct 165  Q
    ||||||||  |||||||||| |||||  |||||| || || |||||||||||||||||||||||||||||||   |||||||| || |||||  |  ||     
T  15349315 catcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaagctatcattaggataatccgtagacca 15349216  T
Q  166 tagactaagaaattctccaaatacccacaaaccacaat 203  Q
     ||||||| |||||| ||||| ||||||||||||||||    
T  15349215 aagactaaaaaattcgccaaagacccacaaaccacaat 15349178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 4962191 - 4962281
Alignment:
Q  109 tttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccacaaacca 199  Q
    ||||||||||||||||||||||||||||||| ||  |||  || ||||||   ||| |||||| |||||||||||||||||||||||||||    
T  4962191 tttgtattctttcatcacccatatttcaactctacaattgcgataatccatgccccatagactgagaaattctccaaatacccacaaacca 4962281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 12200674 - 12200641
Alignment:
Q  166 tagactaagaaattctccaaatacccacaaacca 199  Q
    ||||||||||||||||||||||||||||||||||    
T  12200674 tagactaagaaattctccaaatacccacaaacca 12200641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 12445102 - 12445069
Alignment:
Q  166 tagactaagaaattctccaaatacccacaaacca 199  Q
    ||||||||||||||||||||||||||||||||||    
T  12445102 tagactaagaaattctccaaatacccacaaacca 12445069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 4031583 - 4031631
Alignment:
Q  94 ccaagacgaattaactttgtattctttcatcacccatatttcaactata 142  Q
    |||||||||||  | ||||||||||||||| ||||||||||||||||||    
T  4031583 ccaagacgaatgcattttgtattctttcataacccatatttcaactata 4031631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 4031710 - 4031773
Alignment:
Q  244 taaaaattttctttccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaa 307  Q
    ||||| |||||||||| |||||||||| ||| | |||||||| || |||| |||||||||||||    
T  4031710 taaaagttttctttccgttaaatcaaaggcaacgataacatttatcgataaatcatgacgaaaa 4031773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 48884246 - 48884176
Alignment:
Q  76 aagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcat 146  Q
    |||||||||||||||   |||||||  ||  ||||||||||||||||||||| ||||||||||| ||||||    
T  48884246 aagaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaactttatcat 48884176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 24310607 - 24310570
Alignment:
Q  107 actttgtattctttcatcacccatatttcaactatatc 144  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  24310607 actttgtattctttcatcacccatatatcaactttatc 24310570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 24416168 - 24416132
Alignment:
Q  108 ctttgtattctttcatcacccatatttcaactatatc 144  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  24416168 ctttgtattctttcatcacccatatatcaactctatc 24416132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University