View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_74 (Length: 316)
Name: NF1643_high_74
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_74 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 47927577 - 47927334
Alignment:
| Q |
7 |
gtgagatgaatcaaggatagccaaatcagatgaatagggaaagtcattttaatgttgaaaatgggatttcagcttaaaacaagcactaaattcctatttc |
106 |
Q |
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| T |
47927577 |
gtgagctgaatcaaggatagccaaatcagatgaatagggaaagtcattttaatgttgaaaatgggatttcagcttaaaacaagcaccaaattcctatttc |
47927478 |
T |
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| Q |
107 |
aaggaggccacaatcagagagagtaaagaagcttaatctgcaaacactttgg-------tttcggctatttgaaggggccttcaattggtttggaatttt |
199 |
Q |
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| T |
47927477 |
aaggaggccacaatcagagagagtaaagaagcttaatctgcaaacactttggtcagaactttcggctatttggaggggccttcaattggtttggaatttt |
47927378 |
T |
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| Q |
200 |
ggatagcgatttatcatcgttgaatctgactcccgatcagcttt |
243 |
Q |
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| T |
47927377 |
ggatagcgatttatcatcgttgaatctaactcccagtcagcttt |
47927334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 37432560 - 37432698
Alignment:
| Q |
7 |
gtgagatgaatcaaggatagccaaatcagatgaat--------agggaaagtcattttaatgttgaaaatgggatttcagcttaaaacaagcactaaatt |
98 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||| |||||||||||| |
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| T |
37432560 |
gtgagttgaatcaaggatagccaaatcagatgaattaaactctagggaaagtcattttaatgtagaaaatgggatttcgactcaaaataagcactaaatt |
37432659 |
T |
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| Q |
99 |
ccta-tttcaaggaggccacaatcagagagagtaaagaa |
136 |
Q |
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| T |
37432660 |
cctattttcaaagaggccacgaccaaagagagaaaagaa |
37432698 |
T |
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