View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_75 (Length: 315)
Name: NF1643_high_75
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_75 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 23989677 - 23989370
Alignment:
| Q |
1 |
gctgccaaagatgtaacaataatgcaatttgtttgttttcttagcaagttgtgattgattgtcggtgtaaaacaattttagaacatgcatatgaattaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23989677 |
gctgccaaagatgtaacaataatgcaatttgtttgttttcttagcaagttgtgattgattgtcggtgtaaaacaattttagaacatgcatatgaattaaa |
23989578 |
T |
|
| Q |
101 |
ttgggttagaaaagttagatatacatcatgtgacatacccttttaagagatgagaccgggaaacaactgtaaacatgttcaaagatctcattgtgcagtc |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23989577 |
ttgggttagagaagttagatatacatcatgtgacatacccttttaagagatgagaccgggaaacaactgtaaacatgttcaaagatctcattgtgcagtc |
23989478 |
T |
|
| Q |
201 |
cgttccatagatactcattgtaatcatcattccacccgtgatgatcctcatacaaattctcattgcactgaccctcgatcgaaactacattcaaccgatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23989477 |
cgttccatagatactcattgtaatcatcattccacccgtgatgatcctcatacaaattctcattgcactgaccctcgatcgaaactacattcaaccgatc |
23989378 |
T |
|
| Q |
301 |
ctcctttg |
308 |
Q |
| |
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|||||||| |
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| T |
23989377 |
ctcctttg |
23989370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 23982995 - 23982708
Alignment:
| Q |
1 |
gctgccaaagatgtaacaataatgcaatttgtttgttttcttagcaagttgtgattgattgtcggtgtaaaacaattttagaacatgcatatgaattaaa |
100 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| |
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| T |
23982995 |
gctgccatagatgtaacaataatgcaatttgtttgttttcttagcaagttgtgattgattgtcggtgtaaaaccattttaaaacacgcatatgaattaaa |
23982896 |
T |
|
| Q |
101 |
ttgggttagaaaagttagatatacatcatgtgacatacccttttaagagatgagaccgggaaacaactgtaaacatgttcaaagatctcattgtgcagtc |
200 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||| ||||||||| |||||| ||||| |
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| T |
23982895 |
ttgggttagagaagttagatatacatcatgtgacatacccttttaagagacgagattggtaaacaactgtaaaattgttcaaaggtctcatcaggcagtg |
23982796 |
T |
|
| Q |
201 |
cgttccatagatact---cattgtaatcatcattccacccgtgatgatcctcatacaaattctcattgcactgaccctcgatcgaaac |
285 |
Q |
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|||||||||||| || || | |||||| |||||||| ||||| ||||||| |||||||||||| ||||||||||| || ||||| |
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| T |
23982795 |
cgttccatagatccttaacaaaatcatcatcgttccacccatgatgttcctcatgcaaattctcattccactgaccctcaattgaaac |
23982708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 23965688 - 23965494
Alignment:
| Q |
3 |
tgccaaagatgtaa--caataatgcaatttgtttgttttcttagcaagttgtgattgattgtcggtgtaaaacaattttagaacatgcatatgaattaaa |
100 |
Q |
| |
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|||||||||||||| | ||| | ||||||||| |||||||| | ||| |||||||||||||| ||||||||||||||| | | |||| |||| ||| |
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| T |
23965688 |
tgccaaagatgtaattctatattacaatttgttagttttcttggtgagtagtgattgattgtcgttgtaaaacaattttaaactgtacataagaatgaaa |
23965589 |
T |
|
| Q |
101 |
ttgggttagaaaagttagatatacatcatgtgacatacccttttaagagatgagaccgggaaacaactgtaaacatgttcaaagatctcattgtg |
195 |
Q |
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|||||||||| ||||||||||| ||| | |||||||||||| || ||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
23965588 |
ttgggttagagaagttagatatgcataaggtgacataccctattcagagatgagacagagaaacaactgtaaacatgttcaaagatctcattgtg |
23965494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 42351330 - 42351381
Alignment:
| Q |
29 |
ttgtttgttttcttagcaagttgtgattgattgtcggtgtaaaacaatttta |
80 |
Q |
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||||||||| |||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
42351330 |
ttgtttgttgtcttagcaagttatgattgattgtcggtttaaaacaatttta |
42351381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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