View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_82 (Length: 292)
Name: NF1643_high_82
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_82 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 37416883 - 37417144
Alignment:
| Q |
20 |
agatgcatacaagacttgcacaaatttcattaccaaattattagagaatgaaattttgttgttcaacaaggactcacataatgctaatgacacaatccag |
119 |
Q |
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| T |
37416883 |
agatgcatacaagacttgcacaaatttcattaccaaattattagagaatgaaattttgttgttcaacaaggactcacataatgctaatgacacaatccac |
37416982 |
T |
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| Q |
120 |
aggtgttccaaacacctcaaatgacttgacagcattatttccaacagaaattgtcatcacagtttttccaatagtaaaaatatacgaaaaaactaagttg |
219 |
Q |
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| T |
37416983 |
aagtgttccaaacacctcaaatgacttgacagcattatttccaacagaaattgtcatcacagtttttccaatagtaaaaatataagaaaaaactaagttg |
37417082 |
T |
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| Q |
220 |
ccgttttcatcaaaagctccctgatattgtccaagcgcttttaaccaagattttccactcat |
281 |
Q |
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| T |
37417083 |
ccgttttcatcaaaagctgcctgatattgtccaagcgcttttaaccaagattttccactcat |
37417144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 37424415 - 37424676
Alignment:
| Q |
20 |
agatgcatacaagacttgcacaaatttcattaccaaattattagagaatgaaattttgttgttcaacaaggactcacataatgctaatgacacaatccag |
119 |
Q |
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| T |
37424415 |
agatgcatacaagacttgcacaaatttcattaccaaattattagagaatgaaattttgttgttcaacaaggacttacataatgctaatgacacaatccac |
37424514 |
T |
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| Q |
120 |
aggtgttccaaacacctcaaatgacttgacagcattatttccaacagaaattgtcatcacagtttttccaatagtaaaaatatacgaaaaaactaagttg |
219 |
Q |
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| T |
37424515 |
aagtgttccaaacacctcaaatgacttgacagcattatttccaacagaatttgtcatcacagtttttccaatagtaaaaatatatgaaaaaactaagttg |
37424614 |
T |
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| Q |
220 |
ccgttttcatcaaaagctccctgatattgtccaagcgcttttaaccaagattttccactcat |
281 |
Q |
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| T |
37424615 |
ccgttttcatcaaaagctgcctgatattgtccaagcgcttttaaccaagatttttcactcat |
37424676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 8573759 - 8573811
Alignment:
| Q |
58 |
tattagagaatgaaattttgttgttcaacaaggactcacataatgctaatgac |
110 |
Q |
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|||||||||||| |||||||||| ||||||||| |||| ||||||||||||| |
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| T |
8573759 |
tattagagaatgcaattttgttggtcaacaagggctcatgtaatgctaatgac |
8573811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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