View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_87 (Length: 280)
Name: NF1643_high_87
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_87 |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 51 - 175
Target Start/End: Complemental strand, 10393674 - 10393550
Alignment:
| Q |
51 |
acaggtacatatgaactttgaatcttcatcaacttatacaaggtggacaggtgttataataatgaaaaactttaatgattcaaataataatcatcccaat |
150 |
Q |
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| T |
10393674 |
acaggtacatatgaactttgaatcttcatcaacttatacaaggtggacaggtgttataatattgaaaaagtttaatcattcaaataataatcatcccaat |
10393575 |
T |
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| Q |
151 |
atatagggatatactaataactttg |
175 |
Q |
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| T |
10393574 |
agatatggatatactaataactttg |
10393550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 10393526 - 10393461
Alignment:
| Q |
199 |
cgagtggtcaacaaatattcaaataaacgc--acatatagggagggagaaatatgatgatccaagt |
262 |
Q |
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| T |
10393526 |
cgagtggtcaacaaatactcaaataaacgcgcacatatagggagggaaaaatatgatgattcaagt |
10393461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 10393717 - 10393688
Alignment:
| Q |
9 |
ttaggtggtctctgttgtgaacatctgaac |
38 |
Q |
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| T |
10393717 |
ttaggtggtctctgttgtgaacatctgaac |
10393688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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