View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_89 (Length: 278)
Name: NF1643_high_89
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_89 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 262
Target Start/End: Original strand, 11325682 - 11325930
Alignment:
| Q |
14 |
agatggtcatacacaattgcataataatcagattattggagttaagaattccaagttggtgaagactactacactccgagaagccaaagggaagaacaag |
113 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11325682 |
agatggtcctagacaattgcataataatcagattattggagttaagaattccaagttggcgaagactactacactccgagaagccaaagggaagaacaag |
11325781 |
T |
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| Q |
114 |
aacccgacctttccctctctcgaaaggatcaatcaacaaaacaaactgtgatttgaattgtcttgtgttacctcgttactactgctatatattcattaac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11325782 |
aacccgacctttccctctctcgaaaggatcaatcaacaaaacaaactgtgatttgaattgtcttgtgttacctcgttactactgctatatattcatcaac |
11325881 |
T |
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| Q |
214 |
caacttctcttcctctttctctctattcaatcacttctcatcatcaatc |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11325882 |
caacttctcttcctctttctctctattcaatcacttctcatcatcaatc |
11325930 |
T |
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