View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1643_high_90 (Length: 277)
Name: NF1643_high_90
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_90 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 52664762 - 52664497
Alignment:
| Q |
1 |
ttaaaaagtctgaatccccggtctagggtcctgacaacggcaatgccactgcctcttgaaactggattttgttacattcacgttgaaaattttgcttaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52664762 |
ttaaaaagtctgaatccccggtctagggtcctgacaacggcaatgccactgcctcttgaaactggattttgttacattcacgttgaaaattttgcttaaa |
52664663 |
T |
|
| Q |
101 |
attcatcgggaaacggatatgtaaggaacttcaatctattgggattaagcttcaataatttgaattttaaggtattaattttatcggtttgaagaactcn |
200 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
52664662 |
attcaccggg-aacggatatgtaaggaacttcaatctattgggattaagcttcaatagtttgaattttaaggtattaattttatgggtttgaagaactct |
52664564 |
T |
|
| Q |
201 |
nnnnnnnnttaatttggaattttctaaatttctttttaaaagaagataatatggatgaagatgatga |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52664563 |
aaaaaaaattaatttggaattttctaaatttctttttaaaagaagataatatggatgaagatgatga |
52664497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University