View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1643_high_97 (Length: 264)
Name: NF1643_high_97
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_97 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 8616370 - 8616134
Alignment:
| Q |
18 |
ggttcatcatacggaaaagctgtaatatgcgctcatcacttctagcgttaggagtcaaagacgtctgtacaataaaatggcgttgagaaccatcagaacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8616370 |
ggttcatcatacggaaaagctgtaatatgcgctcatcacttctagcgttaggagtcaaagacgtctgtacaataaaatggcgttgagaaccatcagaacc |
8616271 |
T |
|
| Q |
118 |
aattagagtcagacgccgaaaactgctcccatgcctccgtacaattggaatatcagctgcaaccctatccaatttcacagtatgatcaggtgcaatttcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8616270 |
aattagagtcagacgccgaaaactgctcccatgcctccgtacaattggaatatcagctgcaaccctatccaatttcacagtatgatcaggtgcaatttcc |
8616171 |
T |
|
| Q |
218 |
tggaatataataaataaatgaatgagaatcagtataa |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8616170 |
tggaatataataaataaatgaatgagaatcagtataa |
8616134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University