View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_98 (Length: 263)
Name: NF1643_high_98
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_98 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 23176124 - 23175992
Alignment:
| Q |
14 |
agatactacacaaacgctttgaatggaagaatgagttatttcactagcaaatgatacatgtaatatagcatctgctactactggtatattcggtgtttta |
113 |
Q |
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| T |
23176124 |
agatactacacaaacgctttgaatggaagaatgagttatttaactagcaaatgatacatgtaatatggcatctgctactactggtatattcggtgtttta |
23176025 |
T |
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| Q |
114 |
atgtttaatcattgtggtctcacctaataattg |
146 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
23176024 |
atgtttaatcattgtggtctcacctaataattg |
23175992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 23587381 - 23587249
Alignment:
| Q |
14 |
agatactacacaaacgctttgaatggaagaatgagttatttcactagcaaatgatacatgtaatatagcatctgctactactggtatattcggtgtttta |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23587381 |
agatactacacaaacgctttgaatggaagaatgagttatttaactagcaaatgatacatgtaatatggcatctgctactactggtatattcggtgtttta |
23587282 |
T |
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| Q |
114 |
atgtttaatcattgtggtctcacctaataattg |
146 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
23587281 |
atgtttaatcattgtggtctcacctaataattg |
23587249 |
T |
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