View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_99 (Length: 261)
Name: NF1643_high_99
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_99 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 41561256 - 41561036
Alignment:
| Q |
17 |
agatggattcaatgtaaactttccacaatgacaaaggttgaagatnnnnnnntcgtagatctaaatattaaattttgagtttaattatttgtggaagaat |
116 |
Q |
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| T |
41561256 |
agatggattcaatgtaaactttccacaatgacaaaggttgaagataaaaaattcgtagatctaaatattaa-ttttgagtttaattatttgtggaagaat |
41561158 |
T |
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| Q |
117 |
ttttctaatgttttcaacatatctnnnnnnncattcaaatgtattcatttaactacaaagattaaaattgttttcaggattattgtattgactaaagaat |
216 |
Q |
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| T |
41561157 |
ttttctaatgttttcaacatatctaaaaaaacattgaaatgtattcatttaacaacaaagattaaaattgttttcaggattattgtattgactaaagaat |
41561058 |
T |
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| Q |
217 |
gcttagcttttttcagatagaa |
238 |
Q |
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| T |
41561057 |
gcttagcttttttcagatagaa |
41561036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 3157770 - 3157826
Alignment:
| Q |
78 |
taaatattaaattttgagtttaattatttgtggaagaatttttctaatgttttcaaca |
135 |
Q |
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| T |
3157770 |
taaaaattaaattttgagtt-aattttttgtggaagaacttttataatgttttaaaca |
3157826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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