View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1643_low_10 (Length: 581)
Name: NF1643_low_10
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 547; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 18 - 568
Target Start/End: Complemental strand, 21644424 - 21643874
Alignment:
| Q |
18 |
acatcccactcacttttatgctttccttttaagcaagacgccatagttacaatagctagggccagtcccttacatttatcgcagagttctcgtggcaaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21644424 |
acatcccactcacttttatgctttccttttaagcaagacgccatagttacaatagctagggccagtcccttacatttatcgcagagttctcgtggcaaac |
21644325 |
T |
|
| Q |
118 |
catccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggattcatctttagataaaagctctagatgaatattcttttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21644324 |
catccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggattcatctttagataaaagctctagatgaatattcttttg |
21644225 |
T |
|
| Q |
218 |
acagtccattgaagtgcatacttgctgattacgagtggttacaagaatattccataaatcatctactataacaagaattcgtttattttctgtcaaactc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21644224 |
acagtccattgaagtgcatacttgctgattacgagtggttacaaggatattccataaatcatctactataacaagaattcgtttattttctgtcaaactc |
21644125 |
T |
|
| Q |
318 |
aaccacaaccgttgtgctcttccctcttcgctttcttcattgagtttcaagtttaacatgtctgccatttttccatgaatgtctctaatattttgagttt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21644124 |
aaccacaaccgttgtgctcttccctcttcgctttcttcattgagtttcaagtttaacatgtctgccatttttccatgaatgtctctaatattttgagttt |
21644025 |
T |
|
| Q |
418 |
gagacgctgtgatagatattaccttgtcgaacatatttgattcctaggccttctcaccacatccacccattccatacacacctatcatataggaacattt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21644024 |
gagacgctgtgatagatattaccttgtcgaacatatttgattcctaggccttctcaccacatccacccattccatacacacctatcatataggaacattt |
21643925 |
T |
|
| Q |
518 |
ataccaatactttcactgttttctttctcctatactctctcatcttgtttc |
568 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21643924 |
ataccaatactttcactgttttctttctcctatactctctcatcttgtttc |
21643874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 18 - 568
Target Start/End: Complemental strand, 21622710 - 21622160
Alignment:
| Q |
18 |
acatcccactcacttttatgctttccttttaagcaagacgccatagttacaatagctagggccagtcccttacatttatcgcagagttctcgtggcaaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21622710 |
acatcccactcacttttatgctttccttttaagcaagacgccatagttacaatagctagggccagtcccttacatttatcgcagagttctcgtggcaaac |
21622611 |
T |
|
| Q |
118 |
catccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggattcatctttagataaaagctctagatgaatattcttttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21622610 |
catccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggattcatctttagataaaagctctagatgaatattcttttg |
21622511 |
T |
|
| Q |
218 |
acagtccattgaagtgcatacttgctgattacgagtggttacaagaatattccataaatcatctactataacaagaattcgtttattttctgtcaaactc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21622510 |
acagtccattgaagtgcatacttgctgattacgagtggttacaaggatattccataaatcatctactataacaagaattcgtttattttctgtcaaactc |
21622411 |
T |
|
| Q |
318 |
aaccacaaccgttgtgctcttccctcttcgctttcttcattgagtttcaagtttaacatgtctgccatttttccatgaatgtctctaatattttgagttt |
417 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21622410 |
aaccataaccgttgtgctcttccctcttcgctttcttcattgagtttcaagtttaacatgtctaccatttttccatgaatatctctaatattttgagttt |
21622311 |
T |
|
| Q |
418 |
gagacgctgtgatagatattaccttgtcgaacatatttgattcctaggccttctcaccacatccacccattccatacacacctatcatataggaacattt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21622310 |
gagacgctgtgatagatattaccttgtcgaacatatttgattcctaggccttctcaccacatccacccattccatacacacctatcatataggaacattt |
21622211 |
T |
|
| Q |
518 |
ataccaatactttcactgttttctttctcctatactctctcatcttgtttc |
568 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21622210 |
ataccaatactttcactgttttctttctcctatactctctcatcttgtttc |
21622160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 21715305 - 21715559
Alignment:
| Q |
18 |
acatcccactcacttttatgctttccttttaagcaagacgccatagttacaatagctagggccagtcccttacatttatcgcagagttctcgtggcaaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
21715305 |
acatcccactcacttttatgctttccttttaagcaagacgccatagttacaatagctaggggcagtcccttacatttatcgcagagttctcgtggcacac |
21715404 |
T |
|
| Q |
118 |
catccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggattcatctttagataaaagctctagatgaatattcttttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||| |
|
|
| T |
21715405 |
catccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggattcatctttagataagagcgccaggtgaatattcttttg |
21715504 |
T |
|
| Q |
218 |
acagtccattgaagtgcatacttgctgattacgagtggttacaagaatattccat |
272 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
21715505 |
acagtccattaaagtgcatacttgctgattacgagtggttacaaggattttccat |
21715559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 267 - 471
Target Start/End: Original strand, 21715614 - 21715818
Alignment:
| Q |
267 |
ttccataaatcatctactataacaagaattcgtttattttctgtcaaactcaaccacaaccgttgtgctcttccctcttcgctttcttcattgagtttca |
366 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21715614 |
ttccataaatcatcaattataacaagaattcgtttattttctttcaaactcaaccacaaccgttgtgctcttccctcttcgctttcttccttgagtttca |
21715713 |
T |
|
| Q |
367 |
agtttaacatgtctgccatttttccatgaatgtctctaatattttgagtttgagacgctgtgatagatattaccttgtcgaacatatttgattcctaggc |
466 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
21715714 |
agtttaacatgtctgccatttttccttgaatgtctctaatattttgagtttgagacactgtgatagatattaccttatcgaacatatttgattcctgagc |
21715813 |
T |
|
| Q |
467 |
cttct |
471 |
Q |
| |
|
||||| |
|
|
| T |
21715814 |
cttct |
21715818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 21704211 - 21703957
Alignment:
| Q |
18 |
acatcccactcacttttatgctttccttttaagcaagacgccatagttacaatagctagggccagtcccttacatttatcgcagagttctcgtggcaaac |
117 |
Q |
| |
|
||||||||||||||||| || || ||||||||| ||||||||| ||||||||| ||||| | |||||| |||||||||| ||||||||| |||||| || |
|
|
| T |
21704211 |
acatcccactcacttttgtgtttcccttttaaggaagacgccacagttacaattgctagaggcagtcctttacatttattgcagagttcatgtggcacac |
21704112 |
T |
|
| Q |
118 |
catccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggattcatctttagataaaagctctagatgaatattcttttg |
217 |
Q |
| |
|
|| ||| ||| || || || | |||||||| | |||||||||||||||||||||||| ||||| | || |||||| ||| | |||| |||| | ||||| |
|
|
| T |
21704111 |
cacccaatgatttagagaattcatcagtaatatctgcatgcttttggaacaaagtccaagattcgttttcagataagagccccagattaataattttttg |
21704012 |
T |
|
| Q |
218 |
acagtccattgaagtgcatacttgctgattacgagtggttacaagaatattccat |
272 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||| || |||||| |
|
|
| T |
21704011 |
acagttcattgaagtgcatacttgccgattacgagtggttacaaggattttccat |
21703957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 267 - 476
Target Start/End: Complemental strand, 21703902 - 21703692
Alignment:
| Q |
267 |
ttccataaatcatctactataacaagaattcgtttatttt-ctgtcaaactcaaccacaaccgttgtgctcttccctcttcgctttcttcattgagtttc |
365 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||| |||| || ||| |||||||||||| |||||||||||| | ||||| ||||||| |||||||| |
|
|
| T |
21703902 |
ttccacaaatcgtctactatgacaagaattcgtttttttttctttcagactcaaccacaaacgttgtgctctttcgtcttcatcttcttcactgagtttc |
21703803 |
T |
|
| Q |
366 |
aagtttaacatgtctgccatttttccatgaatgtctctaatattttgagtttgagacgctgtgatagatattaccttgtcgaacatatttgattcctagg |
465 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| | ||||| ||| ||||||||||| ||||||| | || ||||| ||||||||||||||||||| | |
|
|
| T |
21703802 |
aagtttaacaaagctgccatttttccttgaatttttctaacgtttggagtttgagacactgtgattaagataaccttatcgaacatatttgattcctcag |
21703703 |
T |
|
| Q |
466 |
ccttctcacca |
476 |
Q |
| |
|
|||||| |||| |
|
|
| T |
21703702 |
ccttcttacca |
21703692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 268 - 471
Target Start/End: Complemental strand, 21115348 - 21115145
Alignment:
| Q |
268 |
tccataaatcatctactataacaagaattcgtttattttctgtcaaactcaaccacaaccgttgtgctcttccctcttcgctttcttcattgagtttcaa |
367 |
Q |
| |
|
|||||| ||| || ||||| | ||||||||| || |||| | | |||| |||||| || |||||||||||||||||||| |||||||| | | |||||| |
|
|
| T |
21115348 |
tccatagatcgtccactattataagaattcgcttcttttgttttaaacacaaccataaacgttgtgctcttccctcttcactttcttcctccaatttcaa |
21115249 |
T |
|
| Q |
368 |
gtttaacatgtctgccatttttccatgaatgtctctaatattttgagtttgagacgctgtgatagatattaccttgtcgaacatatttgattcctaggcc |
467 |
Q |
| |
|
||||||||| ||||| | |||||| |||||| ||||||||||| ||||||||| | ||||| ||||| ||||| || ||||||| | |||||| ||| |
|
|
| T |
21115248 |
gtttaacatatctgcaagttttccctgaatgcctctaatatttggagtttgagcgacagtgattgatataaccttatcaaacatatctaattcctcagcc |
21115149 |
T |
|
| Q |
468 |
ttct |
471 |
Q |
| |
|
|||| |
|
|
| T |
21115148 |
ttct |
21115145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 258
Target Start/End: Complemental strand, 21115595 - 21115418
Alignment:
| Q |
81 |
agtcccttacatttatcgcagagttctcgtggcaaaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggatt |
180 |
Q |
| |
|
||||| ||||| | || ||||| ||| ||||||| |||||||| | ||||||| | | |||| ||| ||||| ||||||||| || ||||| |||| |
|
|
| T |
21115595 |
agtccattacactcattgcagacttcccgtggcacaccatccaataacttggagtattcgtcatcaattcttgcaaacttttggaataatgtccaagatt |
21115496 |
T |
|
| Q |
181 |
catctttagataaaagctctagatgaatattcttttgacagtccattgaagtgcatacttgctgattacgagtggtta |
258 |
Q |
| |
|
|||||| ||| || ||| | | |||||| |||||||||||||||||||| || || || |||| |||||||||||||| |
|
|
| T |
21115495 |
catcttcagacaagagccccaaatgaatcttcttttgacagtccattgatgtacagacatgctcattacgagtggtta |
21115418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 474 - 509
Target Start/End: Original strand, 21715848 - 21715883
Alignment:
| Q |
474 |
ccacatccacccattccatacacacctatcatatag |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
21715848 |
ccacatccacccattccatacacacctatcatatag |
21715883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 507
Target Start/End: Complemental strand, 21703667 - 21703634
Alignment:
| Q |
474 |
ccacatccacccattccatacacacctatcatat |
507 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
21703667 |
ccacatccacccattccatacactcctatcatat |
21703634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 500 - 532
Target Start/End: Original strand, 21621492 - 21621524
Alignment:
| Q |
500 |
tatcatataggaacatttataccaatactttca |
532 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
21621492 |
tatcatagaggaacatttataccaatactttca |
21621524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 268 - 427
Target Start/End: Original strand, 23010517 - 23010676
Alignment:
| Q |
268 |
tccataaatcatctactataacaagaattcgtttattttctgtcaaactcaaccacaaccgttgtgctcttccctcttcgctttcttcattgagtttcaa |
367 |
Q |
| |
|
||||||||||||||||||| || ||||| || || |||||| |||||||||||||||| ||||||||||||||||| || |||||||| | | ||||| |
|
|
| T |
23010517 |
tccataaatcatctactattacgagaatccgcttcttttctttcaaactcaaccacaaacgttgtgctcttccctcatcactttcttcctccaatttcat |
23010616 |
T |
|
| Q |
368 |
gtttaacatgtctgccatttttccatgaatgtctctaatattttgagtttgagacgctgt |
427 |
Q |
| |
|
||| || | || || |||||||| ||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
23010617 |
gttcaaaacatcagctatttttccttgaatatctctaatattgggagtttgagacactgt |
23010676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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