View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_102 (Length: 270)
Name: NF1643_low_102
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_102 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 39720417 - 39720658
Alignment:
| Q |
13 |
aaaatggaacccattgtgtacgtgcaaagtttaaatctacccttcaacctaaatccatgagagcacgtgcaagaggtaccatatgagatatttaagagtt |
112 |
Q |
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| T |
39720417 |
aaaatggaacccattgtgtacgtgcagagtttaaatctacccttcaacctaaatccatgagagcacgtgcaagaggtaccatatgagatatttaagagtt |
39720516 |
T |
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| Q |
113 |
tctggagcagagttgccagctgatttgtttgcactctctccattagcttttgagaatttgtcttttgttttagatggttatggaactgaatgatattctc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39720517 |
tctggagcagagttgccagctgatttgtttgcactctctccattagcttttgagaatttgtcttttgttttagacggttatggaactgaatgatattctc |
39720616 |
T |
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| Q |
213 |
tattttagtcgctattttctatgaagtttatatattcagagt |
254 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39720617 |
tattttattcgctattttctatgaagtttatatattcagagt |
39720658 |
T |
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