View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_103 (Length: 270)
Name: NF1643_low_103
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_103 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 45746202 - 45746443
Alignment:
| Q |
12 |
atgagatgtcatttgcaaaatcaagggactctgtccaatctgaaggcagtactgattcttttgctttccctgtgtaagtcaatcttatattatcaatcaa |
111 |
Q |
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| T |
45746202 |
atgagatgtcatttgcaaaatcaagggactctgtccaatctgaaggcagtactgattcttttgctttccctgtgtaagtcaatcttatattatcaatcaa |
45746301 |
T |
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| Q |
112 |
tcataatcgtcatttgtctaatgtnnnnnnnnnnnnnnnnnttatatagannnnnnnggaggaggaaaaattatattgttaatcggtcattattgtcata |
211 |
Q |
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| T |
45746302 |
tcataatcgtcatttgtctaatgt------aaaaaaaaaaattatatagatttttttggaggaggaaaaattatattgttaatcggtcattattgtcata |
45746395 |
T |
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| Q |
212 |
ttcaaaacgttagatttcaatcataactagttttgtgatttgttgatg |
259 |
Q |
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| T |
45746396 |
ttcaaaacgttagatttcaatcataactagttttgtgatttgttgatg |
45746443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 45734942 - 45735053
Alignment:
| Q |
12 |
atgagatgtcatttgcaaaatcaagggactctgtccaatctgaaggcagtactgattcttttgctttccctgtgtaagtcaatcttatattatcaatcaa |
111 |
Q |
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| T |
45734942 |
atgagatgacatttgcagaatcaagggaatgtgtccaatctgaaggcagtactgattcttttgcttttcctgtgtaagtcaatcttatattatcaatcaa |
45735041 |
T |
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| Q |
112 |
tcataatcgtca |
123 |
Q |
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| T |
45735042 |
tcctaatcgtca |
45735053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 45735104 - 45735180
Alignment:
| Q |
183 |
tatattgttaatcggtcattattgtcatattcaaaacgttagatttcaatcataactagttttgtgatttgttgatg |
259 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45735104 |
tatattattaatcggtcattattgtcatattcaaaacgttagatttcaatcataactagttttgggatttgttgatg |
45735180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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