View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_104 (Length: 264)
Name: NF1643_low_104
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_104 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 1216906 - 1217098
Alignment:
| Q |
13 |
aaggcatcaatcacatgtaattgcataaactaatttctcgagataactcagagttgtttaaatgatcgactatccatagttgaacatttgaccaaataat |
112 |
Q |
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| T |
1216906 |
aaggcatcaatcacatgtaattgcataaactaatttctcgagataacctagagttgtttaaatgatcgattatccatagttgaacatttgaccaaataat |
1217005 |
T |
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| Q |
113 |
tgacatactcagctatctaccatttgtgtcacataccatgttagtgacacttatgatttttaagttttattgtaaataagatcatagaagcta |
205 |
Q |
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| T |
1217006 |
tgacatactcagctatctaccatttgtgtcacataccatgttagtgacacttatgatttttaagttttattgtaaataagatcatagaagcta |
1217098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 1217439 - 1217513
Alignment:
| Q |
190 |
aagatcatagaagctaaaatacaaattgtctgatcatcttcatctaacagtcaataatgggcgactacaatattt |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
1217439 |
aagatcatagaagctaaaatacaaattgtctgatcatcttcatctaacagtcaatgatgggcgactacaacattt |
1217513 |
T |
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