View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_11 (Length: 564)
Name: NF1643_low_11
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 16 - 546
Target Start/End: Complemental strand, 38831593 - 38831074
Alignment:
| Q |
16 |
agagatgaaagccaaagagaaatggaggagaatttatcaattgagacatgtgactttgctgatctttccgaaggaaacttattggaaagcatcaatttcg |
115 |
Q |
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| T |
38831593 |
agagatgaaagccaaagagaaatggaggagaatttatcaattgagacatgtgactttgctgatctttccgaagggaacttattggaaagcatcaatttcg |
38831494 |
T |
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| Q |
116 |
aattcgatgatgatttcttcgtatgtttcaacgacggagatgtgttaccggatcttgagatggacccggaaatgcttgctgaattctccctcagcagcag |
215 |
Q |
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| T |
38831493 |
aattcgatgatgatttcttcgtatgcttcaacgacggagatgtgttaccggatcttgagatggacccggaaatgcttgctgaattctccctcagcagcag |
38831394 |
T |
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| Q |
216 |
cggtgaggaatcggatataaattcgtcgggtgcaaatagcaaatcttgtaatgatgggaatatggttagtattgagagaaaattacaagatgaagagaaa |
315 |
Q |
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| T |
38831393 |
cggtgaggaatcggatataaattcgtcgggtgcaaatagcaaatcttgtaatgatgggaatatggttagtattgagagaaaattacaagatgaagagaaa |
38831294 |
T |
|
| Q |
316 |
gtagtttattcttcagattcaagttcgagtcgtgtggaagagataattagcaaaagagatgaatccgttgtgccgaatccattgcctaaggaaggtgaga |
415 |
Q |
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| T |
38831293 |
gtagtttattcttcagattcaagttcgagtcgtgtggaagagataattagcaaaagagatgaatccgttgtgccgaatccattgcctaaggaaggtgaga |
38831194 |
T |
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| Q |
416 |
aaggaagaaaatcatcatctcaatcaaagaataatcctcatgggaagagaaaagttaaggtgagttactatatatataattgctatttaatttggtatat |
515 |
Q |
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| T |
38831193 |
aaggaagaaaatcatcatctcaatcaaagaataatcctcatgggaagagaaaagtgaaggtgag-----------ataattgctatttaatttggtatat |
38831105 |
T |
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| Q |
516 |
gtttgttaattagttacaaacccttttactt |
546 |
Q |
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| T |
38831104 |
gtttgttaattagttacaaacccttttactt |
38831074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 30463872 - 30463923
Alignment:
| Q |
65 |
gtgactttgctgatctttccgaaggaaacttattggaaagcatcaatttcga |
116 |
Q |
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| T |
30463872 |
gtgactttggcgacctttccgaaggaaatttattggaaagcatcaacttcga |
30463923 |
T |
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