View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_110 (Length: 260)
Name: NF1643_low_110
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_110 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 7432759 - 7432530
Alignment:
| Q |
14 |
tactttgaaatttgaaagagtatgtgtataacttaagatagagaattgggaaaatacttgatgatttaagttttagtgactttagtatatttaattgata |
113 |
Q |
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| T |
7432759 |
tactttgaaatttgaaagagtatgtgtataactaaagatagagaattgggaaaatacttgatgatttaagttttagtgacgttagtatatttaattgata |
7432660 |
T |
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| Q |
114 |
aacgaatgattgattnnnnnnnngatagagataaagtcacgaaactcaaaatcatgtccaaccggtccaa-tgatccatccaatatatgggagggtaccc |
212 |
Q |
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||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7432659 |
aacgaatgattgattaaaaaaaagatagagataaagtcaagaaactcaaaatcatgtccaaccggtccaattgatccatccaatatatgggagggtaccc |
7432560 |
T |
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| Q |
213 |
gtcccatatacacatttctcacaactcatc |
242 |
Q |
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||||||||||||||||||||| |||||||| |
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| T |
7432559 |
gtcccatatacacatttctcaaaactcatc |
7432530 |
T |
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