View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_114 (Length: 254)
Name: NF1643_low_114
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_114 |
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Alignment Details
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 43527146 - 43527271
Alignment:
| Q |
124 |
ggttgatgtttcctgtttgccgaatgcttagatggatttgaagtaaagggccggggtagatgatcaccattatattgcctccacaaatcgaccag----a |
219 |
Q |
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| T |
43527146 |
ggttgatgtttcctgtttgccgaatgcttagatggatttgaagtaaagggccggggtagatgatcaccattatattgcctccacaaatcgaccagacata |
43527245 |
T |
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| Q |
220 |
cattctggatccaacacttctgatac |
245 |
Q |
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| T |
43527246 |
cattctggatccaacacttctgatac |
43527271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 43527053 - 43527092
Alignment:
| Q |
31 |
aggttcagatggacaacatgaacataaagcaacacttgac |
70 |
Q |
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| T |
43527053 |
aggttcagatggacaacatgaacataaagcaacacttgac |
43527092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 43542440 - 43542482
Alignment:
| Q |
196 |
tattgcctccacaaatcgaccagacattctggatccaacactt |
238 |
Q |
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| T |
43542440 |
tattgcctccacaaatcgaccagacattctggatccagcactt |
43542482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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