View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_low_120 (Length: 249)

Name: NF1643_low_120
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_low_120
NF1643_low_120
[»] chr3 (3 HSPs)
chr3 (1-235)||(44388948-44389184)
chr3 (129-183)||(38462210-38462264)
chr3 (126-179)||(1395604-1395657)
[»] scaffold0590 (1 HSPs)
scaffold0590 (129-224)||(1161-1257)
[»] scaffold0275 (1 HSPs)
scaffold0275 (129-224)||(2718-2814)
[»] chr8 (2 HSPs)
chr8 (127-183)||(14482131-14482187)
chr8 (129-228)||(39392748-39392848)
[»] chr4 (3 HSPs)
chr4 (129-181)||(46013387-46013439)
chr4 (129-181)||(46247149-46247201)
chr4 (126-164)||(4071830-4071868)
[»] chr2 (5 HSPs)
chr2 (129-220)||(38239638-38239730)
chr2 (1-42)||(12313127-12313168)
chr2 (132-164)||(12215755-12215787)
chr2 (126-162)||(31461388-31461424)
chr2 (121-161)||(43199365-43199405)
[»] chr7 (4 HSPs)
chr7 (127-162)||(12835022-12835057)
chr7 (127-181)||(30496635-30496689)
chr7 (126-222)||(49060429-49060526)
chr7 (130-162)||(45813268-45813300)
[»] chr5 (3 HSPs)
chr5 (127-164)||(10303749-10303786)
chr5 (127-164)||(35095868-35095905)
chr5 (1-41)||(36145687-36145727)
[»] chr1 (1 HSPs)
chr1 (127-159)||(27738265-27738297)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 44388948 - 44389184
Alignment:
Q  1 ataagtacttgtgagattgctttggagaatttatgaaaacagttt--gacatttccatgagctgtgttttcagctgatttccataagttcccaacgatgg 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44388948 ataagtacttgtgagattgctttggagaatttatgaaaacagtttatgacatttccatgagctgtgttttcagctgatttccataagttcccaacgatgg 44389047  T
Q  99 cttatgaaaaacaacttatatagaagttaatttgactttattttatcttttggtgtagaaatagttcacacatatacacttatatcatgaggcttattct 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||||||||||    
T  44389048 cttatgaaaaacaacttatatagaagttaatttgactttattttatcttttggtgtagaaatagtttacagataaacatttatatcatgaggcttattct 44389147  T
Q  199 ataattacttaattaagatgtttatcgaaataagacc 235  Q
    |||||||||||||||||||||||||||||||||||||    
T  44389148 ataattacttaattaagatgtttatcgaaataagacc 44389184  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 38462264 - 38462210
Alignment:
Q  129 tttgactttattttatcttttggtgtagaaatagttcacacatatacacttatat 183  Q
    |||||||||||||||||||||||| ||||||||| | | | ||| ||||||||||    
T  38462264 tttgactttattttatcttttggtatagaaatagcttataaataaacacttatat 38462210  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 1395657 - 1395604
Alignment:
Q  126 taatttgactttattttatcttttggtgtagaaatagttcacacatatacactt 179  Q
    ||||||||||||||||||||||||| | ||||||||| | | |||||| |||||    
T  1395657 taatttgactttattttatcttttgttatagaaatagcttatacatatgcactt 1395604  T

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Target: scaffold0590 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 1161 - 1257
Alignment:
Q  129 tttgactttattttatcttttggtgtagaaatagttcacacatatacacttatatcat-gaggcttattctataattacttaattaagatgtttatc 224  Q
    |||||||||||||||||||||| | ||||||||| | | |||||  ||||||||| || || | |||| |||||| |||||||||||| ||||||||    
T  1161 tttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagtacttaattaagttgtttatc 1257  T

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Target: scaffold0275 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 224
Target Start/End: Complemental strand, 2814 - 2718
Alignment:
Q  129 tttgactttattttatcttttggtgtagaaatagttcacacatatacacttatatcat-gaggcttattctataattacttaattaagatgtttatc 224  Q
    |||||||||||||||||||||| | ||||||||| | | |||||  ||||||||| || || | |||| |||||| |||||||||||| ||||||||    
T  2814 tttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagtacttaattaagttgtttatc 2718  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 14482187 - 14482131
Alignment:
Q  127 aatttgactttattttatcttttggtgtagaaatagttcacacatatacacttatat 183  Q
    |||||||||||||||||||||||| | ||||||||||| | |||||  |||||||||    
T  14482187 aatttgactttattttatcttttgttatagaaatagtttatacataagcacttatat 14482131  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 39392748 - 39392848
Alignment:
Q  129 tttgactttattttatcttttggtgtagaaatagttcacacatatacacttatatcatgag-gcttattctataattacttaattaagatgtttatcgaa 227  Q
    |||||||||||||||||||||| | ||||||||||| | |||||  ||||||||| || ||  ||||| |||||| | |||||||||| | ||||| |||    
T  39392748 tttgactttattttatcttttgttatagaaatagtttatacatagccacttatatgataagcacttatgctataaatgcttaattaagttatttatggaa 39392847  T
Q  228 a 228  Q
    |    
T  39392848 a 39392848  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 46013387 - 46013439
Alignment:
Q  129 tttgactttattttatcttttggtgtagaaatagttcacacatatacacttat 181  Q
    |||||||||||||||||||||| |  |||||||||| ||||||| ||||||||    
T  46013387 tttgactttattttatcttttgttccagaaatagtttacacataaacacttat 46013439  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 46247201 - 46247149
Alignment:
Q  129 tttgactttattttatcttttggtgtagaaatagttcacacatatacacttat 181  Q
    |||||||||||||||||||||| |  |||||||||| ||||||| ||||||||    
T  46247201 tttgactttattttatcttttgttccagaaatagtttacacataaacacttat 46247149  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 4071868 - 4071830
Alignment:
Q  126 taatttgactttattttatcttttggtgtagaaatagtt 164  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  4071868 taatttgactttattttatcttttgttatagaaatagtt 4071830  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 220
Target Start/End: Original strand, 38239638 - 38239730
Alignment:
Q  129 tttgactttattttatcttttggtgtagaaatagttcacacatatacacttatatcatgag-gcttattctataattacttaattaagatgtt 220  Q
    |||||||| ||||||||||||| | ||||||||| | | ||||| ||||||| || ||||| |||||| ||| || | |||||||||||||||    
T  38239638 tttgacttgattttatcttttgttatagaaatagcttatacataaacacttacatgatgagtgcttatgctacaagtgcttaattaagatgtt 38239730  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12313127 - 12313168
Alignment:
Q  1 ataagtacttgtgagattgctttggagaatttatgaaaacag 42  Q
    ||||| ||||||||||||| || |||||||||||||||||||    
T  12313127 ataagcacttgtgagattgtttgggagaatttatgaaaacag 12313168  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Complemental strand, 12215787 - 12215755
Alignment:
Q  132 gactttattttatcttttggtgtagaaatagtt 164  Q
    ||||||||||||||||||| |||||||||||||    
T  12215787 gactttattttatcttttgttgtagaaatagtt 12215755  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 31461424 - 31461388
Alignment:
Q  126 taatttgactttattttatcttttggtgtagaaatag 162  Q
    ||||||||||||||||||||||||| | |||||||||    
T  31461424 taatttgactttattttatcttttgttatagaaatag 31461388  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 43199405 - 43199365
Alignment:
Q  121 gaagttaatttgactttattttatcttttggtgtagaaata 161  Q
    |||| |||||| |||||||||||||||||| ||||||||||    
T  43199405 gaagataatttaactttattttatcttttgttgtagaaata 43199365  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 162
Target Start/End: Original strand, 12835022 - 12835057
Alignment:
Q  127 aatttgactttattttatcttttggtgtagaaatag 162  Q
    |||||||||||||||||||||||| |||||||||||    
T  12835022 aatttgactttattttatcttttgttgtagaaatag 12835057  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 30496689 - 30496635
Alignment:
Q  127 aatttgactttattttatcttttggtgtagaaatagttcacacatatacacttat 181  Q
    |||||||||||||||||| ||||| | ||||||||||| | ||||| ||||||||    
T  30496689 aatttgactttattttatattttgttatagaaatagtttatacataaacacttat 30496635  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 49060526 - 49060429
Alignment:
Q  126 taatttgactttattttatcttttggtgtagaaatagttcacacatatacacttatatcatgaggc-ttattctataattacttaattaagatgttta 222  Q
    ||||||||||||||||||| ||||| | ||||||||| | | ||||| | |||||||| || || | |||| |||||| | |||||||||| ||||||    
T  49060526 taatttgactttattttattttttgttatagaaatagcttatacataaatacttatatgataagccattatactataagtgcttaattaagctgttta 49060429  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 45813268 - 45813300
Alignment:
Q  130 ttgactttattttatcttttggtgtagaaatag 162  Q
    ||||||||||||||||||||||| |||||||||    
T  45813268 ttgactttattttatcttttggtatagaaatag 45813300  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 10303786 - 10303749
Alignment:
Q  127 aatttgactttattttatcttttggtgtagaaatagtt 164  Q
    |||||||||||||||||||||||| | |||||||||||    
T  10303786 aatttgactttattttatcttttgttatagaaatagtt 10303749  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 35095868 - 35095905
Alignment:
Q  127 aatttgactttattttatcttttggtgtagaaatagtt 164  Q
    |||||||||||||||||||||||| | |||||||||||    
T  35095868 aatttgactttattttatcttttgttatagaaatagtt 35095905  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 36145727 - 36145687
Alignment:
Q  1 ataagtacttgtgagattgctttggagaatttatgaaaaca 41  Q
    |||||||| |||||||||| || ||||||||||||||||||    
T  36145727 ataagtacctgtgagattgattgggagaatttatgaaaaca 36145687  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 27738265 - 27738297
Alignment:
Q  127 aatttgactttattttatcttttggtgtagaaa 159  Q
    |||||||||||||||||||||||| ||||||||    
T  27738265 aatttgactttattttatcttttgttgtagaaa 27738297  T

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