View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_123 (Length: 249)
Name: NF1643_low_123
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_123 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 19054660 - 19054424
Alignment:
| Q |
1 |
aaacggcataaagatgcaagtattccaaaatctcagcatgagaagggtaatctttactttctctttcaggccaagggaaatcactaaattcataattcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19054660 |
aaacggcataaagatgcaagtattccaaaatctcagcatgagaagggtaatctttactttctctttcaggccaagggaaatcactaaattcataattcca |
19054561 |
T |
|
| Q |
101 |
tgtttgtgattgaagcttagtacacctataggaacaatgtctccaaacaccaccaattgaatcagtggcttcaaaaacaatagggttgtagtgtgatagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19054560 |
tgtttgtgattgaagcttagtacacctataggaacaatgtctccaaacaccaccaattgaatcagtggcttcaaaaacaatagggttgtagtgtgatagt |
19054461 |
T |
|
| Q |
201 |
tgttttgctacggctatgccactaactccagcaccta |
237 |
Q |
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|||||||||||||||| |||||||||||||||||||| |
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| T |
19054460 |
tgttttgctacggctaagccactaactccagcaccta |
19054424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 19192147 - 19192370
Alignment:
| Q |
14 |
atgcaagtattccaaaatctcagcatgagaagggtaatctttactttctctttcaggccaagggaaatcactaaattcataattccatgtttgtgattga |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19192147 |
atgcaagtattccaaaatctcagcatgagaagggtaatcaatactctctcttttaggccaaggaaaatcactaaattcataattccatgtttgtgattga |
19192246 |
T |
|
| Q |
114 |
agcttagtacacctataggaacaatgtctccaaacaccaccaattgaatcagtggcttcaaaaacaatagggttgtagtgtgatagttgttttgctacgg |
213 |
Q |
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| T |
19192247 |
agtttagtacacctataggaacaatgtctccaaacaccaccaatggagttagtggcttcaaaaacaatagggttgtagtgtgatagttgttttgctacgg |
19192346 |
T |
|
| Q |
214 |
ctatgccactaactccagcaccta |
237 |
Q |
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||| ||||| ||||||||||||| |
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| T |
19192347 |
ctaaaccactcactccagcaccta |
19192370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 6898611 - 6898847
Alignment:
| Q |
1 |
aaacggcataaagatgcaagtattccaaaatctcagcatgagaagggtaatctttactttctctttcaggccaagggaaatcactaaattcataattcca |
100 |
Q |
| |
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||||||||||| | | |||||||||||||||||| ||| |||||| | || |||||| ||||||||||||||||||||||| ||||||||||| || |
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| T |
6898611 |
aaacggcataagcacgtaagtattccaaaatctcaacataagaaggatgttcagaactttccctttcaggccaagggaaatcactgaattcataattaca |
6898710 |
T |
|
| Q |
101 |
tgtttgtgattgaagcttagtacacctataggaacaatgtctccaaacaccaccaattgaatcagtggcttcaaaaacaatagggttgtagtgtgatagt |
200 |
Q |
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|||| ||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
6898711 |
tgttggtgattgaagcttagtacattttgaggaacaatgtctccaaacacccccaattgaatcagtggcttcaaaaacaattgggttatagtgtgatagt |
6898810 |
T |
|
| Q |
201 |
tgttttgctacggctatgccactaactccagcaccta |
237 |
Q |
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||||| ||||||||| ||||| ||||||||||||| |
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| T |
6898811 |
tgtttgactacggctaaaccactcactccagcaccta |
6898847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 51731488 - 51731568
Alignment:
| Q |
150 |
ccaccaattgaatcagtggcttcaaaaacaatagggttgtagtgtgatagttgttttgctacggctatgccactaactcca |
230 |
Q |
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|||||||| || |||||||||||||| |||||||| |||| |||| |||| |||||||| | ||||||||||| |||||| |
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| T |
51731488 |
ccaccaatggagtcagtggcttcaaatacaataggattgtggtgtaatagctgttttgcaattgctatgccacttactcca |
51731568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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