View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_129 (Length: 247)
Name: NF1643_low_129
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_129 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 24532466 - 24532225
Alignment:
| Q |
1 |
ttatgtatttttgtataaatattcatgatgagcaaccttgatcccacttaacaaaatttctggattcgatgctgattatgtcgacagacacattgaaagg |
100 |
Q |
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| T |
24532466 |
ttatgtatttctgtataaatattcatgatgagcaaccttgatcccacttaacaaaatttctggattcgatgctgattatgtcgacagacacattgaaagg |
24532367 |
T |
|
| Q |
101 |
gccatcacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggccttggcactgcgtaatacctaaaagatgaattttca |
200 |
Q |
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||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24532366 |
gcctttacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggccttggcactgcgtaatacctaaaagatgaattttca |
24532267 |
T |
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| Q |
201 |
ccaagccgataccttccaatacattgaccattaacctatgct |
242 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24532266 |
ccaagccgataccttccaatacattgaccattaacccatgct |
24532225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 24525795 - 24525553
Alignment:
| Q |
1 |
ttatgtat-ttttgtataaatattcatgatgagcaaccttgatcccacttaacaaaatttctggattcgatgctgattatgtcgacagacacattgaaag |
99 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24525795 |
ttatgtatattttttataaatattcatgatgagcaaccttgatcccacttaacaaaatttctggattcgatgctgattatgtcgacagacacattgaaag |
24525696 |
T |
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| Q |
100 |
ggccatcacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggccttggcactgcgtaatacctaaaagatgaattttc |
199 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24525695 |
ggccttcacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggccttggcactgcgtaatacctaaaagatgaattttc |
24525596 |
T |
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| Q |
200 |
accaagccgataccttccaatacattgaccattaacctatgct |
242 |
Q |
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||||||| ||||||||||||||| ||||||||||||| ||||| |
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| T |
24525595 |
accaagctgataccttccaatactttgaccattaacccatgct |
24525553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 290742 - 290501
Alignment:
| Q |
1 |
ttatgtatttttgtataaatattcatgatgagcaaccttgatcccacttaacaaaatttctggattcgatgctgattatgtcgacagacacattgaaagg |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| |||| | |||||||||||||||||||||||| |
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| T |
290742 |
ttatatatttttgtataaatattcatgatatgcaaccttgatcccacttaacgaaatttttggattcgttgctaactatgtcgacagacacattgaaagg |
290643 |
T |
|
| Q |
101 |
gccatcacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggccttggcactgcgtaatacctaaaagatgaattttca |
200 |
Q |
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||| ||||| ||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
290642 |
gccttcacctagacccagctcttcaaacaagaccaacgtgtttacatctttatttaagaatggccttggcactgcgtaaaacctaaaagatgaattttca |
290543 |
T |
|
| Q |
201 |
ccaagccgataccttccaatacattgaccattaacctatgct |
242 |
Q |
| |
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|||| || ||||||||| |||| |||||| |||||| ||||| |
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| T |
290542 |
ccaatccaataccttccgatactttgaccgttaacccatgct |
290501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 280266 - 280207
Alignment:
| Q |
113 |
acccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggccttggcac |
172 |
Q |
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||||| |||||||||||| ||||| ||||||||||| ||||| ||||||| ||||||||| |
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| T |
280266 |
acccatttcctcaaacaaaaccaacgtgtttacatcattatttaagaatgaccttggcac |
280207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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