View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_13 (Length: 552)
Name: NF1643_low_13
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 2372876 - 2372621
Alignment:
| Q |
1 |
ttaaaggcgatgtgagatttaaccacccacacttacaatccaaaagatcaaatacattatgtagtcattgatgttagatgtttgtaacatgctatttctt |
100 |
Q |
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| T |
2372876 |
ttaaagacgatgtgagatttaaccacccacacttacaatccaaaagatcaaatacattatgtagtcattgatgttagatgtttgtaacatgctatttctt |
2372777 |
T |
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| Q |
101 |
tgaannnnnnnngttaggaattagtctttcaagtcaaacaatgttgacgctgttgcacattttcatacaactccacaaaaagtgttcatgtgatcattta |
200 |
Q |
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| T |
2372776 |
tgaaatttttttgttaggaattagtctttcaagtcaaacaatgttgacgctgttgcacattttcatacaacttcacaaaaagtgttcatgtgatcattta |
2372677 |
T |
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| Q |
201 |
ataccgaggtggtaggtccaaatcaacaaattatatttttatatttaacttctatt |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2372676 |
ataccgaggtggtaggtccaaatcaacaaattatatttttatatttaacttctatt |
2372621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 318 - 403
Target Start/End: Complemental strand, 2372559 - 2372474
Alignment:
| Q |
318 |
tgtgaatttcacattcaaaccaaaatctaaagtgtttgtagagaagaaatcaaagtaagagagggggatccacttttaagtgttcg |
403 |
Q |
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| T |
2372559 |
tgtgaatttcacattcaaaccaagatctaaagtgtttgtagagaagaaatcaaaataagagagggggatccacttttaagtgttcg |
2372474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 474 - 535
Target Start/End: Complemental strand, 2372404 - 2372343
Alignment:
| Q |
474 |
aaataaaaagatattatgttgaattgaccataattatttattttctttaggaccaacattat |
535 |
Q |
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| T |
2372404 |
aaataaaaagatattatgttgaattgaccataattatttattttctttacgaccaacattat |
2372343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 449
Target Start/End: Complemental strand, 2372456 - 2372428
Alignment:
| Q |
421 |
ctagattgaagatggggataaagatgatg |
449 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2372456 |
ctagattgaagatggggataaagatgatg |
2372428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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