View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_130 (Length: 247)
Name: NF1643_low_130
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_130 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 36268187 - 36268410
Alignment:
| Q |
16 |
tgattctccgtaatttaaaaccttgctaactacccattaatctttccatttattgtataggtaccagcttatgtagcagctcaagtctttggatccacac |
115 |
Q |
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| T |
36268187 |
tgattctccgtaatttaaaaccttgctaactacccattaatctttccatttattgtataggtaccagcttatgtagcagctcaagtctttggatccacac |
36268286 |
T |
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| Q |
116 |
ttgcaagtggaactcttagactaatatttaccggcaaacataatcaatttgttggaacacttccagctgggtctgaccttcaagcttttgtgattgaatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36268287 |
ttgcaagtggaactcttagactaatatttaccggcaaacataatcaatttgttggaacacttccagctgggtctgaccttcaagcttttgtgattgaatt |
36268386 |
T |
|
| Q |
216 |
catcatcactttttaccctatgtt |
239 |
Q |
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||||||||||||||||| |||||| |
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| T |
36268387 |
catcatcactttttaccttatgtt |
36268410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 239
Target Start/End: Original strand, 36263204 - 36263372
Alignment:
| Q |
71 |
tataggtaccagcttatgtagcagctcaagtctttggatccacacttgcaagtggaactcttagactaatatttaccggcaaacataatcaatttgttgg |
170 |
Q |
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||||||||||||||||| || ||||||| |||| ||| | |||||||| ||||||||||| | ||||||||| | ||| |||| | || ||| || |
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| T |
36263204 |
tataggtaccagcttatatatcagctcagctcttgggagcaacacttgctagtggaactctaaaactaatattcagtggcgcacatgaccacttttcagg |
36263303 |
T |
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| Q |
171 |
aacacttccagctgggtctgaccttcaagcttttgtgattgaattcatcatcactttttaccctatgtt |
239 |
Q |
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| T |
36263304 |
aacacttccttctgggtctaaccttcaagcttttgttcttgaattcataaccacattttaccttatgtt |
36263372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 227
Target Start/End: Original strand, 5397575 - 5397708
Alignment:
| Q |
94 |
gctcaagtctttggatccacacttgcaagtggaactcttagactaatatttaccggcaaacataatcaatttgttggaacacttccagctgggtctgacc |
193 |
Q |
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||||| ||| |||| || ||||||||||||||| ||| | ||| ||||| | ||||| | |||||||||| ||||||||||||||||| ||||| | |
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| T |
5397575 |
gctcaggtcgttggctcaacacttgcaagtggagttctcaaacttatattcagtggcaaggaaaatcaatttgcaggaacacttccagctggttctgatc |
5397674 |
T |
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| Q |
194 |
ttcaagcttttgtgattgaattcatcatcacttt |
227 |
Q |
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| T |
5397675 |
ttcaagcttttgtggtcgaatttattatcacttt |
5397708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 5389828 - 5389993
Alignment:
| Q |
74 |
aggtaccagcttatgtagcagctcaagtctttggatccacacttgcaagtggaactcttagactaatatttaccggcaaacataatcaatttgttggaac |
173 |
Q |
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||||||| |||||| || | ||||||| ||||||| || |||||||||||||||||||| || ||||| | |||||| | || || ||| ||||| |
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| T |
5389828 |
aggtaccggcttatatactatctcaagttcttggatcaacccttgcaagtggaactcttaggcttatattcaatggcaaagaaaaccatttttcaggaac |
5389927 |
T |
|
| Q |
174 |
acttccagctgggtctgaccttcaagcttttgtgattgaattcatcatcactttttaccctatgtt |
239 |
Q |
| |
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||||||| |||| ||||| || || || |||||| | |||||||| ||||||||||| | |||||| |
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| T |
5389928 |
acttccaactggttctgatctccaggcatttgtggtcgaattcataatcactttttatcttatgtt |
5389993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 239
Target Start/End: Complemental strand, 5407335 - 5407169
Alignment:
| Q |
73 |
taggtaccagcttatgtagcagctcaagtctttggatccacacttgcaagtggaactcttagactaatatttaccggcaaacataatcaatttgttggaa |
172 |
Q |
| |
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||||||||||||||| || ||||| ||| ||| || ||||||||||||| | |||| | ||| ||||| | ||||| | |||||||||| |||| |
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| T |
5407335 |
taggtaccagcttatataattgctcaggtcgctggctcaacacttgcaagtgaagctctcaaactcatattcagtggcaaggaaaatcaatttgcaggaa |
5407236 |
T |
|
| Q |
173 |
cacttccagctgggtctgaccttcaagcttttgtgattgaattcatcatcactttttaccctatgtt |
239 |
Q |
| |
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||||||| ||||| | |||| ||||||||||||| | ||||| || |||||||| |||| |||||| |
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| T |
5407235 |
cacttccggctggtttggaccatcaagcttttgtggtcgaatttattatcactttctaccttatgtt |
5407169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 5403174 - 5403339
Alignment:
| Q |
74 |
aggtaccagcttatgtagcagctcaagtctttggatccacacttgcaagtggaactcttagactaatatttaccggcaaacataatcaatttgttggaac |
173 |
Q |
| |
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||||||| |||||| || | ||||||| ||||||| || |||||||||||||| ||||| || ||||| | |||||| | || || ||| ||||| |
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| T |
5403174 |
aggtaccggcttatataatatctcaagttcttggatcaacccttgcaagtggaacacttaggcttatattcaatggcaaagaaaaccatttttcaggaac |
5403273 |
T |
|
| Q |
174 |
acttccagctgggtctgaccttcaagcttttgtgattgaattcatcatcactttttaccctatgtt |
239 |
Q |
| |
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||||||| |||| ||||| || || || |||||| | |||||||| ||||||||||| | |||||| |
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| T |
5403274 |
acttccaactggttctgatctccaggcatttgtggtcgaattcataatcactttttatcttatgtt |
5403339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 206
Target Start/End: Original strand, 5415535 - 5415648
Alignment:
| Q |
93 |
agctcaagtctttggatccacacttgcaagtggaactcttagactaatatttaccggcaaacataatcaatttgttggaacacttccagctgggtctgac |
192 |
Q |
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|||||| ||| ||||||||||| | |||||||||| || ||||||||||||| || || || |||| ||| ||||||||||||||||||| ||| | |
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| T |
5415535 |
agctcaggtccttggatccacattagcaagtggaagcctcagactaatatttaatggtgaagatgatcattttattggaacacttccagctggttctaat |
5415634 |
T |
|
| Q |
193 |
cttcaagcttttgt |
206 |
Q |
| |
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| ||||||||||| |
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| T |
5415635 |
ttgcaagcttttgt |
5415648 |
T |
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