View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_131 (Length: 245)
Name: NF1643_low_131
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_131 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 9147755 - 9147877
Alignment:
| Q |
105 |
aaaccactagaattcaaccccatagcccccacagcccccaaaaacagcacaatcagatgatgacaactcccccaaaaccagcaggagcacgctgtcagac |
204 |
Q |
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| T |
9147755 |
aaaccactagaattcaaccccatagcccccacagcccccaaaaacagcacaatcagatgatgacaactcccccaaaaccagcaggagcacgctgtcagac |
9147854 |
T |
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| Q |
205 |
acacaggcagcaagtgaaagctg |
227 |
Q |
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| T |
9147855 |
acacaggcagcaagtgaaagctg |
9147877 |
T |
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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 9147618 - 9147685
Alignment:
| Q |
11 |
cagagaggcggagaaaa-atacaaggatgccacctataggtgtaacatcacaaaaactccacaagaac |
77 |
Q |
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| T |
9147618 |
cagagaggtggagaaaaaatacaaggatgccacctataggtgtaacatcacaaaaactccacaagaac |
9147685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 19109509 - 19109589
Alignment:
| Q |
14 |
agaggcggagaaaa-atacaaggatgccacctataggtgtaacatcacaaaaactccacaagaacaaccttaaccaaggcg |
93 |
Q |
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| T |
19109509 |
agaggcggagaaaaaatacaaggatgccacatataggcgtaacatcacaaaaactccacaagaacaccctaaaccaaggcg |
19109589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 11822371 - 11822290
Alignment:
| Q |
14 |
agaggcggagaaaaa--tacaaggatgccacctataggtgtaacatcacaaaaactccacaagaacaaccttaaccaaggcg |
93 |
Q |
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||||||||||||||| ||||| |||| | |||||| |||||||||||||||||||||||||||| ||| ||| |||||| |
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| T |
11822371 |
agaggcggagaaaaaaatacaaagatggtgcatataggcgtaacatcacaaaaactccacaagaacaccctaaacaaaggcg |
11822290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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