View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_135 (Length: 243)
Name: NF1643_low_135
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_135 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 51670360 - 51670122
Alignment:
| Q |
1 |
atcacactagcaccgtgattttattgaagttccaaattataacttttgttaaaatcagtgccacgcaaggatttcactcaccgtttatccaaacatgcac |
100 |
Q |
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| T |
51670360 |
atcacactagcaccgtgattttattgaagttccaaattataacttttgttaaaatcagtgccacgcaaggatttcactcaccgtttatccaaacatgcac |
51670261 |
T |
|
| Q |
101 |
tatattttcacaaagcagaaactaacttgcctgaattgcattatgtgcgagatatttctgcctactaccactgaagctgacatcaattcgatcccaaatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
51670260 |
tatattttcacaaagcagaaactaacttgcctgaattgcattatgtgcgagatatttctgcctactaccactgaagctgacatcaattcgatcccaactc |
51670161 |
T |
|
| Q |
201 |
actgttgttaggcctctgatcatttcctctgcgagtatt |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
51670160 |
actgttgttaggcctctgatcatttcctctgcgagtatt |
51670122 |
T |
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