View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_138 (Length: 238)
Name: NF1643_low_138
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_138 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7152784 - 7153007
Alignment:
| Q |
1 |
ctgcatctatttcattcaagaaatgagcctcaacttaagtcaatttttgataaggttattatgctctatatagatggcctttaaaacattgaaggtatag |
100 |
Q |
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| T |
7152784 |
ctgcatctatttcattcaagaaatgagcctcaacttaagtcaatttttgatcaggttattatgctctatatagatggcctttaaaacattgaaggtatag |
7152883 |
T |
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| Q |
101 |
tcaagtttacatatgcag---gataaagtacatatacaaactgaataattgggttagaaatggcataccctcatattctaatgcaaatacatccaacaga |
197 |
Q |
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| T |
7152884 |
tcaagtttacatatgcagcatgataaattacatatacaaactgaataattggtttagaaatggcataccctcatattctaatgcaaatacatccaacaga |
7152983 |
T |
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| Q |
198 |
tgcacataaaaagtagggaataaa |
221 |
Q |
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|||||| ||||||||||||||||| |
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| T |
7152984 |
tgcacagaaaaagtagggaataaa |
7153007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 7166103 - 7166238
Alignment:
| Q |
21 |
aaatgagcctcaacttaagtcaatttttgataaggttattatgctctatata-gatggcctttaaaacattgaaggtatagtcaagtttacatatgcagg |
119 |
Q |
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||||||| ||||||| |||||||| |||||| ||||||||| ||| |||||| | |||||| |||||||||| |||||| | |||| ||||||||||| |
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| T |
7166103 |
aaatgagactcaactgaagtcaatctttgatcaggttattaggctatatatatgttggcctaagaaacattgaaagtatagcctagttaacatatgcagg |
7166202 |
T |
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| Q |
120 |
ataaagt--acatatacaaactgaataattgggtta |
153 |
Q |
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||| ||| ||| |||||||||||||||||| |||| |
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| T |
7166203 |
atagagtgcacacatacaaactgaataattgagtta |
7166238 |
T |
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