View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_14 (Length: 551)
Name: NF1643_low_14
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 3262658 - 3262966
Alignment:
| Q |
1 |
cttccgcctccggagcttcccgccttgtcacgcactctctcacctcgaatcagaggttcaaccgcctccgctaatatttcgggtcgggccaattccataa |
100 |
Q |
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| T |
3262658 |
cttccgcctccggagcttcccgccttgtcacgcactctctcacctcggatcagaggttcaaccgcctccgctaatatttcgggtcgggtcaattccataa |
3262757 |
T |
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| Q |
101 |
tcacaacaaactctccttattacttaggtttaaacaaagtcgcagataatccttatcatcggattcatagtcctgatggtgttattcagcttggtttagc |
200 |
Q |
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| T |
3262758 |
tcacaacaaactctccttattacgtaggtttaaacaaagtcgcagataatccttatcatcggattcataatcctgatggtgttattcagcttggtttagc |
3262857 |
T |
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| Q |
201 |
ccaaaacacagtgagttattccttttctcttctctattggcaattccggtgttcgacatgtgtctgagtccttgtgattatattcaatttccatctgtgt |
300 |
Q |
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| T |
3262858 |
ccaaaacaccgtgagttgttccttttctcttctctattggcaattccggtgttcgacatgtgtctgagtccttgtgattatattcaatttccatctgtgt |
3262957 |
T |
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| Q |
301 |
ccacgtgtt |
309 |
Q |
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||||||||| |
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| T |
3262958 |
ccacgtgtt |
3262966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 305 - 541
Target Start/End: Original strand, 3262996 - 3263232
Alignment:
| Q |
305 |
gtgttttatggcttctcttatgttattttcgaagctacaattgcatttgtgactgttcttgtttgttgtagctatgtgtggatttgattgaagaatggat |
404 |
Q |
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| T |
3262996 |
gtgttttatggcttctcttatgttattttcgaagctacaattgcatttgtgactgttcttgtttgttgtagctatgtgtggatttgattgaagaatggat |
3263095 |
T |
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| Q |
405 |
tcgtcacaatggaagcgctgctatattagggacaccatcaaattgtggttgcctcagtatcactgaccttgctacttaccatggattcatggacttcaaa |
504 |
Q |
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| T |
3263096 |
tcgtcacaatggaagcgctgctatattagggacaccatcaaattgtggttgcctcagtatcactgaccttgctacttaccatggattcatggacttcaaa |
3263195 |
T |
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| Q |
505 |
gtggtgggtaattacttcctatctttgtacctttgtt |
541 |
Q |
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| T |
3263196 |
gtggtgggtaattacatcctatctttgtacctttgtt |
3263232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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