View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1643_low_141 (Length: 237)
Name: NF1643_low_141
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_141 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 44388846 - 44388625
Alignment:
| Q |
1 |
taatctagaatccttcaatagtttcattaataatactgttatttagcagcattaactgttattactttagtaacataagagacaggactacatagtacat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
44388846 |
taatctagaatccttcaatagtttcattaataatactgttatttagcagcagtaactgttattactttagtaacataagagaaaggactgcatagtacat |
44388747 |
T |
|
| Q |
101 |
gtaaataataaaagaaatatggcaagttaagtaacatacccatcaatcaatttattgagttcaggaagcaacttagcatctgttaacacattgatctctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44388746 |
gtaaataataaaagaaatatggcaagttaagtaacatacccatcaatcaatttattgagttcaggaagcaacttagcatctgttaacacattgatctctc |
44388647 |
T |
|
| Q |
201 |
ttgatatcacactgattgaagt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
44388646 |
ttgatatcacactgattgaagt |
44388625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University