View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_15 (Length: 535)
Name: NF1643_low_15
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Original strand, 23989684 - 23990208
Alignment:
| Q |
1 |
tatgcacacaagttgggtaaacagctctttttctatttactatttacttccaaatttatgaataaccgacacatacaccaaacatgacactgatattgac |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23989684 |
tatgcacacaaattgggtaaacagctctttttctatttactagttacttccaaatttatgaattaccgacacatacaccaaacatgacactgatattgac |
23989783 |
T |
|
| Q |
101 |
aaatagatactaataataaataatttattaaagtgaaagtgattcaatgtaacaatatgtgtccgtgttgattggtgtacaccacacacatgttcaatct |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23989784 |
aaatagatactaataataaataatttattaaaatgaaagtgattcaatgtaacaatatgtgtccgtgttgattggtgtacaccacacacatgttcaatct |
23989883 |
T |
|
| Q |
201 |
aaagtatatgcctatttaaaacctcaaaattcaatactgattc-tacttatgatttttcttttgcagccaactctggaaaacggtgataaaagtaagtgc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23989884 |
aaagtatatgcctatttaaaacctcaaaattcaatactgattcttacttctgatttttcttttgcagccaactctggaaaacggtgataaaagtaagtgc |
23989983 |
T |
|
| Q |
300 |
actaaaaccttacatagttacattgtattatttggtatcaaacattgtgaaattctttttgatagctaatacaaattatttttcctttcagttatcatgc |
399 |
Q |
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| T |
23989984 |
actaacaccttacatagttacattgtattatttggtatcaaacattgtgaaattctttttgacagctaatacaaattctttttcctttcagttatcatgc |
23990083 |
T |
|
| Q |
400 |
cctcttcagctctagatcgccttggtaagtttatatttgtcatttaggtttcaataatttga---ttattttttcctcccatgctaaattagta---tta |
493 |
Q |
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| T |
23990084 |
cctcttcagctctagatcgccttggtaagtttatatttgtcatttaggtttcaataatttgattttttttttttcctcaaatactaaattagtactctta |
23990183 |
T |
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| Q |
494 |
ttgttaaaatatttcagcacgtttg |
518 |
Q |
| |
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| T |
23990184 |
ttgttaaaatatttcagcacgtttg |
23990208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 186 - 518
Target Start/End: Original strand, 23983177 - 23983514
Alignment:
| Q |
186 |
acacatgttcaatctaaagtatatgcctatttaaaacctcaaaattcaatact--gattct-acttatgatttttcttt--tgcagccaactctggaaaa |
280 |
Q |
| |
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|||||| ||||||||||||| ||||||||||| |||||||||||||||||||| ||| || |||| |||||||||||| ||||||||||||||||||| |
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| T |
23983177 |
acacattttcaatctaaagtgtatgcctatttcaaacctcaaaattcaatactctgatacttacttctgatttttctttcttgcagccaactctggaaaa |
23983276 |
T |
|
| Q |
281 |
cggtgataaaagtaagtgcactaaaaccttacatagttacattgtattatttggtatcaaacattgtgaaattctttttgatagctaatacaaattattt |
380 |
Q |
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| T |
23983277 |
cggtgataaaagtaagcgcactaacaccttacatagttacattgtattatttggtatcaaacattgtgaaattctttttgatagctaatacaaattcttt |
23983376 |
T |
|
| Q |
381 |
ttcctttcagttatcatgccctcttcagctctagatcgccttggtaagtttatatttgtcatttaggtttcaataatttgattattttttcctcccatgc |
480 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23983377 |
ttcctttcagttatcatgccctcttcagctctagatagccttggtaagtttatatttgtcatttaggtttcaataatttgattattttttcctcccatgc |
23983476 |
T |
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| Q |
481 |
taaattagtattattgttaaaatatttcagcacgtttg |
518 |
Q |
| |
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||||||||||||||||||||| | |||||||||||||| |
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| T |
23983477 |
taaattagtattattgttaaactctttcagcacgtttg |
23983514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 73 - 518
Target Start/End: Original strand, 23966003 - 23966466
Alignment:
| Q |
73 |
atacaccaaacatgac-actgatattgacaaatagatactaataataaa-taatttattaaagtgaaagtgattcaatgtaacaatatgtgtccgtgttg |
170 |
Q |
| |
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|||||||||| |||| |||| ||| |||| ||||||| |||||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||| | |
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| T |
23966003 |
atacaccaaatatgatgactgttatcgacagatagataataataataaaataatttacgaaaatgaaagtgattcaatgtaacaatatgtgtctatgtcg |
23966102 |
T |
|
| Q |
171 |
attggt-------------gtacaccacacacatgttcaatctaaagtata--tgcctatttaaaacctcaaaattcaatactgattct-acttatgatt |
254 |
Q |
| |
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|| || |||||||| |||||| |||||||||| || || ||| ||||| |||||||||| |||||||| ||||| |||| ||||| |
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| T |
23966103 |
atcagtcacaaacatagtcgtacaccatacacatcttcaatctaatgtgtagatgc-tattttaaacctcaaatttcaataccaattcttacttctgatt |
23966201 |
T |
|
| Q |
255 |
tttct--tttgcagccaactctggaaaacggtgataaaagtaagtgcactaaaaccttacatagtt-acattgtattatttggtatcaaacattgtgaaa |
351 |
Q |
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||||| ||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23966202 |
tttctattttgcagccaattctggaaaatggtgataaaagtaagtgcactaacaccttacatagtttacattgtattatttggtatcaaacattgtgaaa |
23966301 |
T |
|
| Q |
352 |
ttctttttgatagctaatacaaattatttttcctttcagttatcatgccctcttcagctctagatcgccttggtaagtttatatttgtcatttaggtttc |
451 |
Q |
| |
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|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| |
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| T |
23966302 |
tt----ttgatagctaatacaaattctttttcctttcagttatcatgccctcttcagctctagatcgccttggtaagcttatatctgtcagttaggtttc |
23966397 |
T |
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| Q |
452 |
aataatttgattattttttcctcccatgctaaattagta---ttattgttaaaatatttcagcacgtttg |
518 |
Q |
| |
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|||||||||||| |||||||||| || ||||||||||| |||||||||||||||||||||||||||| |
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| T |
23966398 |
aataatttgatt-ttttttcctcaaatactaaattagtactcttattgttaaaatatttcagcacgtttg |
23966466 |
T |
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