View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_159 (Length: 224)
Name: NF1643_low_159
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_159 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 43 - 218
Target Start/End: Original strand, 41551555 - 41551730
Alignment:
| Q |
43 |
catgtgttgtctgttgaaaaatgaaaatgaattgttattacatataattatttgggnnnnnnntatgattgatatataaatgacctctgttccaattcta |
142 |
Q |
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| T |
41551555 |
catgtgttgtctgttgaaaaatgaaaatgaattgttattacatataattatttgggaaaaaaatatgattgatatataaatgacctctgttccaattcta |
41551654 |
T |
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| Q |
143 |
tttggcagtttcaatgtccgagaaacatctctagacttgtacctcttgtacttggaggtcacaagaagagtaggtt |
218 |
Q |
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| T |
41551655 |
tttggcagtttcaatgtccgagaaacatctctagacttgtacctcttttacttggaggtcacaagaagaggaggtt |
41551730 |
T |
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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 34255428 - 34255514
Alignment:
| Q |
132 |
ttccaattctatttggcagtttcaatgtccgagaaacatctctagacttgtacctcttgtacttggaggtcacaagaagagtaggtt |
218 |
Q |
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| T |
34255428 |
ttccaattctatttggcagatatgatgtccgaaaaacatcccttgacttgtacctgttttacttggaggtcacgaaaagaggaggtt |
34255514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 37556681 - 37556773
Alignment:
| Q |
126 |
cctctgttccaattctatttggcagtttcaatgtccgagaaaca-tctctagacttgtacctcttgtacttggaggtcacaagaagagtaggtt |
218 |
Q |
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| T |
37556681 |
cctctgtttcaattctacttgacagtttcaatgtccgagagacaatct-tagacttgtacctcttttacttggaagtcaccagaagaggaggtt |
37556773 |
T |
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