View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_160 (Length: 216)
Name: NF1643_low_160
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_160 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 3262612 - 3262428
Alignment:
| Q |
16 |
ctgaagaaagtagaaaagagcgcaaggaataactgaaccccaaaaaagaccccctgttccttgaacaactccttgcaaaggcactattattttcatctca |
115 |
Q |
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| T |
3262612 |
ctgaagaaagtagaaaagagcgcaaggaataactgaaccccaaaaaagaccccctgttccttgaacaactccttgcaaaggcactattattttcatctca |
3262513 |
T |
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| Q |
116 |
ttcccactaaaccattggcaactcacttgactttaagtttatgtcatctaatataatataatatattgggtaaattacactcacctccct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3262512 |
ttcccactaaaccattggcaactcacttgactttaagtttatgtcatctaatataa-----tatattgggtaaattacactcacctccct |
3262428 |
T |
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