View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_low_161 (Length: 214)

Name: NF1643_low_161
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_low_161
NF1643_low_161
[»] chr4 (6 HSPs)
chr4 (18-211)||(38072563-38072756)
chr4 (18-182)||(38086102-38086266)
chr4 (18-211)||(38062026-38062219)
chr4 (22-211)||(38081648-38081837)
chr4 (21-166)||(38058280-38058425)
chr4 (22-203)||(37953905-37954086)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 38072756 - 38072563
Alignment:
Q  18 tacagtaggacaaacacctccagggaaaccaagagttttgcttttttgggcaattttgtagtaaagttcaccaagggttgcaccagattgaacccaagca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38072756 tacagtaggacaaacacctccagggaaaccaagagttttgcttttttgggcaattttgtagtaaagttcaccaagggttgcaccagattgaacccaagca 38072657  T
Q  118 gttctgttttctacatctacatcaatttctctaaagtttgtgagatcaatgattacaaaaggaacatttgaaacaaaggagagaccctcgaagt 211  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38072656 gttctgttttctacatctacatcaattcctctaaagtttgtgagatcaatgattacaaaaggaacatttgaaacaaaggagagaccctcgaagt 38072563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 38086266 - 38086102
Alignment:
Q  18 tacagtaggacaaacacctccagggaaaccaagagttttgcttttttgggcaattttgtagtaaagttcaccaagggttgcaccagattgaacccaagca 117  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||  ||||  |||||||||||||||||| |||||||||||||||||||| |||    
T  38086266 tacagtaggacaaacacttgcagggaaaccaagagttttgcttttttggctaattgcgtagtaaagttcaccaagtgttgcaccagattgaacccatgca 38086167  T
Q  118 gttctgttttctacatctacatcaatttctctaaagtttgtgagatcaatgattacaaaaggaac 182  Q
    ||| | || | ||||| ||  ||||||||||| |||||| ||||||||||||  ||||| |||||    
T  38086166 gtttttttgtgtacatttatttcaatttctctgaagtttatgagatcaatgacaacaaatggaac 38086102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 38062026 - 38062219
Alignment:
Q  18 tacagtaggacaaacacctccagggaaaccaagagttttgcttttttgggcaattttgtagtaaagttcaccaagggttgcaccagattgaacccaagca 117  Q
    ||||||||||||| ||||  |||| ||||||||| ||  ||||||| ||  |||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  38062026 tacagtaggacaagcaccggcaggaaaaccaagatttcggctttttcggctaattgtgtagtaaagttcaccaagtgttgcaccagattgaacccaagca 38062125  T
Q  118 gttctgttttctacatctacatcaatttctctaaagtttgtgagatcaatgattacaaaaggaacatttgaaacaaaggagagaccctcgaagt 211  Q
    ||||| |||||||||||||    ||||||||| |||| ||||| ||||||||| ||||| || || |  |||||| ||||  ||||||||||||    
T  38062126 gttcttttttctacatctattgtaatttctctgaagtatgtgaaatcaatgatgacaaatgggacttcagaaacataggaccgaccctcgaagt 38062219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 38081837 - 38081648
Alignment:
Q  22 gtaggacaaacacctccagggaaaccaagagttttgcttttttgggcaattttgtagtaaagttcaccaagggttgcaccagattgaacccaagcagttc 121  Q
    ||||||||| ||||  | |||||| ||||| ||  ||||||||||  |||| ||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  38081837 gtaggacaagcaccagctgggaaagcaagatttcggcttttttggctaattgtgtagtaaagttcaccaagtgttgcaccagactgaacccaagcagttc 38081738  T
Q  122 tgttttctacatctacatcaatttctctaaagtttgtgagatcaatgattacaaaaggaacatttgaaacaaaggagagaccctcgaagt 211  Q
    || ||||||||||||||||||||||  | |||||| ||||||||||||  ||||| ||||  | ||||||| |||| || ||||| ||||    
T  38081737 tgctttctacatctacatcaatttccttgaagtttatgagatcaatgacaacaaatggaatttctgaaacataggataggccctcaaagt 38081648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 38058425 - 38058280
Alignment:
Q  21 agtaggacaaacacctccagggaaaccaagagttttgcttttttgggcaattttgtagtaaagttcaccaagggttgcaccagattgaacccaagcagtt 120  Q
    |||||||||  |||| || || ||||||||| ||| | ||||| ||  |||| ||||||||||||||||||  ||||||||||||||||||||||| ||     
T  38058425 agtaggacattcaccacccggaaaaccaagattttggttttttcggtaaattgtgtagtaaagttcaccaattgttgcaccagattgaacccaagctgtc 38058326  T
Q  121 ctgttttctacatctacatcaatttctctaaagtttgtgagatcaa 166  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  38058325 ctgttttctacatctacttcaatttctctgaagtttgtgagatcaa 38058280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 37954086 - 37953905
Alignment:
Q  22 gtaggacaaacacctccagggaaaccaagagttttgcttttttgggcaattttgtagtaaagttcaccaagggttgcaccagattgaacccaagcagttc 121  Q
    ||||| |||| |||| ||||||| |||||||||||||||||||||  |||||||||  ||||||| |||   ||||| ||   ||||||||| ||| |||    
T  37954086 gtagggcaaatacctgcagggaagccaagagttttgcttttttggctaattttgtacaaaagttcgccagcagttgcccctccttgaacccatgcacttc 37953987  T
Q  122 tgttttctacatctacatcaatttctctaaagtttgtgagatcaatgattacaaaaggaacatttgaaacaaaggagagacc 203  Q
    | |||||||||||||| |  | ||||| || |||| | ||||||||||  ||||| ||||| |  |||||| |||| |||||    
T  37953986 tcttttctacatctacttggacttctcgaaggtttataagatcaatgacaacaaatggaacttcagaaacataggacagacc 37953905  T

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