View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_low_163 (Length: 212)

Name: NF1643_low_163
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_low_163
NF1643_low_163
[»] chr2 (4 HSPs)
chr2 (12-198)||(43874259-43874449)
chr2 (12-198)||(43863108-43863290)
chr2 (11-134)||(43866580-43866703)
chr2 (33-119)||(38990057-38990143)
[»] chr4 (1 HSPs)
chr4 (33-119)||(52187782-52187868)
[»] chr5 (1 HSPs)
chr5 (37-114)||(7022977-7023054)
[»] chr7 (1 HSPs)
chr7 (33-120)||(32414618-32414705)
[»] chr3 (3 HSPs)
chr3 (35-119)||(8032351-8032435)
chr3 (41-112)||(7119797-7119868)
chr3 (33-119)||(777257-777343)
[»] chr6 (2 HSPs)
chr6 (35-66)||(7139769-7139800)
chr6 (35-66)||(8679372-8679403)
[»] scaffold0438 (1 HSPs)
scaffold0438 (30-62)||(6342-6374)
[»] chr8 (3 HSPs)
chr8 (30-62)||(26291960-26291992)
chr8 (30-62)||(26305217-26305249)
chr8 (30-62)||(26338572-26338604)


Alignment Details
Target: chr2 (Bit Score: 128; Significance: 2e-66; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 43874259 - 43874449
Alignment:
Q  12 gatgaaggtatggccgctttaattttcagtgacttcaagttacacaaggaaaggagctctaccgtcaacaaattacgaactaaggtaagaacctaagcaa 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43874259 gatgaaggtatggccgctttaattttcggtgacttcaagttacacaaggaaaggagctctaccgtcaacaaattacgaactaaggtaagaacctaagcaa 43874358  T
Q  112 tcaggaagatattgcaagtcata-nnnnnnnatagatgctataaa---taaatacaaaataaaaagcagcaataatgatacagtatgaagt 198  Q
    |||||  |||||||||||| |||        ||||||||||||||   ||||||||||||||||| |||||||||||||||||||||||||    
T  43874359 tcaggttgatattgcaagtaatattttttttatagatgctataaatagtaaatacaaaataaaaatcagcaataatgatacagtatgaagt 43874449  T

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Target: chr2; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 43863108 - 43863290
Alignment:
Q  12 gatgaaggtatggccgctttaattttcagtgacttcaagttacacaaggaaaggagctctaccgtcaacaaattacgaactaaggtaagaacctaagcaa 111  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||  ||||||||||| ||||||||||||||    
T  43863108 gatgaaggtatgaccactttaattttcagtgacttcaagttacacaaggaagggagctctaccttcaataaaccacgaactaaggaaagaacctaagcaa 43863207  T
Q  112 tcaggaagatattgcaagtcatannnnnnnatagatgctataaataaatacaaaataaaaagcagcaataatgatacagtatgaagt 198  Q
    |||||||| || |||||||||||       ||||||| |    ||||||||||||||||||| |||  |||| ||||||||||||||    
T  43863208 tcaggaagttaatgcaagtcatattttttgatagatgtt----ataaatacaaaataaaaagaagcgttaataatacagtatgaagt 43863290  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 43866580 - 43866703
Alignment:
Q  11 agatgaaggtatggccgctttaattttcagtgacttcaagttacacaaggaaaggagctctaccgtcaacaaattacgaactaaggtaagaacctaagca 110  Q
    ||||||||| |||| || ||| | |||||| |||||||||||| |||||||| ||| ||| ||| |||| |||| ||||||||||| ||| |||||||||    
T  43866580 agatgaaggcatgggcgtttttaatttcagcgacttcaagttaaacaaggaagggaactcaaccttcaataaatcacgaactaaggaaagcacctaagca 43866679  T
Q  111 atcaggaagatattgcaagtcata 134  Q
    ||||||||| || |||||||||||    
T  43866680 atcaggaagttaatgcaagtcata 43866703  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 38990143 - 38990057
Alignment:
Q  33 attttcagtgacttcaagttacacaaggaaaggagctctaccgtcaacaaattacgaactaaggtaagaacctaagcaatcaggaag 119  Q
    |||||||| |||||||||||| |||||| | |||||||  || |||| |||| | ||| ||| | ||||||||||||||||||||||    
T  38990143 attttcagggacttcaagttatacaagggatggagctcagccttcaataaatcaggaaataaagaaagaacctaagcaatcaggaag 38990057  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 52187868 - 52187782
Alignment:
Q  33 attttcagtgacttcaagttacacaaggaaaggagctctaccgtcaacaaattacgaactaaggtaagaacctaagcaatcaggaag 119  Q
    |||||||||||||||||| ||||||||||| ||| ||| ||| |||| |||| | ||||||| | ||||||||||||||||| ||||    
T  52187868 attttcagtgacttcaaggtacacaaggaatggaactcaaccttcaataaatcaggaactaaagaaagaacctaagcaatcaagaag 52187782  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 7023054 - 7022977
Alignment:
Q  37 tcagtgacttcaagttacacaaggaaaggagctctaccgtcaacaaattacgaactaaggtaagaacctaagcaatca 114  Q
    |||||||||||||||||||||||||| |||||||  || |||| || ||| ||||||||| ||||||||||| |||||    
T  7023054 tcagtgacttcaagttacacaaggaagggagctcagccatcaataagttaggaactaaggaaagaacctaagaaatca 7022977  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 32414705 - 32414618
Alignment:
Q  33 attttcagtgacttcaagttacacaaggaaaggagctctaccgtcaacaaattacgaactaaggtaagaacctaagcaatcaggaaga 120  Q
    |||||||||||||||||||||||||||||| | | ||  ||| |||| |||| | |||| |||| |||||||||| ||||||||||||    
T  32414705 attttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaaga 32414618  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 8032351 - 8032435
Alignment:
Q  35 tttcagtgacttcaagttacacaaggaaaggagctctaccgtcaacaaattacgaactaaggtaagaacctaagcaatcaggaag 119  Q
    |||||||||||||||||||| ||||||| ||| ||| |||||||| |||| |  |  | ||| ||||||||||||||||| ||||    
T  8032351 tttcagtgacttcaagttacgcaaggaagggaactcaaccgtcaataaatcataatttcaggaaagaacctaagcaatcatgaag 8032435  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 7119868 - 7119797
Alignment:
Q  41 tgacttcaagttacacaaggaaaggagctctaccgtcaacaaattacgaactaaggtaagaacctaagcaat 112  Q
    |||||||||||||||||||||| | ||||  ||| |||| |||| | |||||||||  ||||||||||||||    
T  7119868 tgacttcaagttacacaaggaaggtagcttaaccttcaataaatcaggaactaaggagagaacctaagcaat 7119797  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 777257 - 777343
Alignment:
Q  33 attttcagtgacttcaagttacacaaggaaaggagctctaccgtcaacaaattacgaactaaggtaagaacctaagcaatcaggaag 119  Q
    ||||||| ||||||||||||||||||| ||  ||| || ||  |||| |||| | |||| |||| ||||||||||||||||| ||||    
T  777257 attttcaatgacttcaagttacacaagtaagagagttcaacgttcaataaatcaggaaccaaggaaagaacctaagcaatcaagaag 777343  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 7139769 - 7139800
Alignment:
Q  35 tttcagtgacttcaagttacacaaggaaagga 66  Q
    ||||||||||||||||||||||||||||||||    
T  7139769 tttcagtgacttcaagttacacaaggaaagga 7139800  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 8679372 - 8679403
Alignment:
Q  35 tttcagtgacttcaagttacacaaggaaagga 66  Q
    ||||||||||||||||||||||||||||||||    
T  8679372 tttcagtgacttcaagttacacaaggaaagga 8679403  T

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Target: scaffold0438 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 6374 - 6342
Alignment:
Q  30 ttaattttcagtgacttcaagttacacaaggaa 62  Q
    |||| ||||||||||||||||||||||||||||    
T  6374 ttaaatttcagtgacttcaagttacacaaggaa 6342  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 26291992 - 26291960
Alignment:
Q  30 ttaattttcagtgacttcaagttacacaaggaa 62  Q
    |||| ||||||||||||||||||||||||||||    
T  26291992 ttaaatttcagtgacttcaagttacacaaggaa 26291960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 26305249 - 26305217
Alignment:
Q  30 ttaattttcagtgacttcaagttacacaaggaa 62  Q
    |||| ||||||||||||||||||||||||||||    
T  26305249 ttaaatttcagtgacttcaagttacacaaggaa 26305217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 26338604 - 26338572
Alignment:
Q  30 ttaattttcagtgacttcaagttacacaaggaa 62  Q
    |||| ||||||||||||||||||||||||||||    
T  26338604 ttaaatttcagtgacttcaagttacacaaggaa 26338572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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