View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_165 (Length: 209)
Name: NF1643_low_165
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_165 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 8338526 - 8338330
Alignment:
| Q |
13 |
cagacgggaaagcaagagaannnnnnnnctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaatt |
112 |
Q |
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| T |
8338526 |
cagacgggaaagcaagagaattgtttttctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaatt |
8338427 |
T |
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| Q |
113 |
gagatcaactgaattgaggtgaagcaggtcaattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaatt |
209 |
Q |
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| T |
8338426 |
gagatcaactgaattgaggtgaagcaggtcaattataacaaaagatatgtctgatacgtaagagaagccttcgtagtcgtggccgccacttcgaatt |
8338330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 4e-43; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 36100614 - 36100450
Alignment:
| Q |
41 |
ctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcagg |
140 |
Q |
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| T |
36100614 |
ctttgaaatggtataataaatcttaccaagtgttgcaccagcttcaacccatgttgtttcatcttgtaaattgacttcaactgaattgaggtgaagcaag |
36100515 |
T |
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| Q |
141 |
tcaattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcg |
205 |
Q |
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| T |
36100514 |
tcaattataacataaggcacgtctgataagtatgagaagccttcataatcgtggccgccacttcg |
36100450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 21482605 - 21482441
Alignment:
| Q |
41 |
ctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcagg |
140 |
Q |
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| T |
21482605 |
ctttccaatggtataataaagctttccaagtgttgcacctgattcaacccatgctgtttcttcttgtaaattgacatcaactgaattgagatgaagcaag |
21482506 |
T |
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| Q |
141 |
tcaattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcg |
205 |
Q |
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| T |
21482505 |
tcaattataacaaaaggcacgtctgatacatatgagaaaccttcaaagtcgtggccgccacttcg |
21482441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 42 - 209
Target Start/End: Complemental strand, 36107872 - 36107705
Alignment:
| Q |
42 |
tttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcaggt |
141 |
Q |
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| T |
36107872 |
tttgcaatgttataataaatcttaccaagtgttgcacctgattcaacccatgctgttgattcttgtaaattgatatcaactgaattgagatgaaacatgt |
36107773 |
T |
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| Q |
142 |
caattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaatt |
209 |
Q |
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| T |
36107772 |
caagtataataaaaggcacatctgatacatatgaaaaaccttcatagtcgtgaccgccacttcgaatt |
36107705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 43 - 209
Target Start/End: Original strand, 36090464 - 36090630
Alignment:
| Q |
43 |
ttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcaggtc |
142 |
Q |
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| T |
36090464 |
ttgcaatcgtataataaatcttaccaagtattgcacctgattcaacccatgcagtttcttcttctaaattgacatcaattgaattgagatgaagcaagtc |
36090563 |
T |
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| Q |
143 |
aattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaatt |
209 |
Q |
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| T |
36090564 |
aattataacataaggcatgtctgatacatttgataaaccttcgtaatcatgtccgccacttcgaatt |
36090630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 46 - 209
Target Start/End: Original strand, 34971777 - 34971940
Alignment:
| Q |
46 |
caatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcaggtcaat |
145 |
Q |
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| T |
34971777 |
caattgtataataaatcttaccaagtgttgcacctgattcaacccatgttgttgattcttgtaaattgacatcaactgaattgaggtgaaacatgtcaag |
34971876 |
T |
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| Q |
146 |
tataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaatt |
209 |
Q |
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| T |
34971877 |
tacaataaaaggcacatctgataaatatgataaaccttcatagtcatgccctccacttcgaatt |
34971940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 209
Target Start/End: Complemental strand, 6838634 - 6838466
Alignment:
| Q |
41 |
ctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcagg |
140 |
Q |
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| T |
6838634 |
ctttgcaatggtataataaatcttaccaagtgttgcacctgattcaacccatgctgttgattcttgtaaattgacatcaacagaattgagatgaaacatg |
6838535 |
T |
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| Q |
141 |
tcaattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaatt |
209 |
Q |
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| T |
6838534 |
tcaagtataacaaaaggcacatctgatacatatgaacaaccttcatagtcgtgaccaccacttcgaatt |
6838466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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