View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_17 (Length: 520)
Name: NF1643_low_17
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Original strand, 52663939 - 52664466
Alignment:
| Q |
1 |
tattcgatctattaaacagcataataggagcattagttaatgatgctacggagtgttttgagacactttataatggccacaacaaaccagtttgttggag |
100 |
Q |
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| T |
52663939 |
tattcgatctcttaaacagaataatatgagcattagttaatgatgataacgagtgtt--gagacactttataatggccacaacaaaccagtttgttggag |
52664036 |
T |
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| Q |
101 |
tcatttccctttgaggatttgttcgttccaagcctcaacactgtggacttcaatcacttgtccttcttttgccattttcct--gtcttaaacttagatta |
198 |
Q |
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| T |
52664037 |
tcatttccctt-gaggatttgttcgttccaagcctcaacactgtggacttcaatcacttgtccttcttccgccattttcctctgtcttaaacttagatta |
52664135 |
T |
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| Q |
199 |
gctatgatctcaaacaaagccggcctcttatataagattttctaattagtcaaccatgttaatctctgtcaagtatcaaaacatggacacctcatca-cc |
297 |
Q |
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| T |
52664136 |
gctatgatctcaaacaaagccggcctcttatataagattttctaattagtcaaccatgttaatctctgtcaagtatcaaaacatggacacctcatcaccc |
52664235 |
T |
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| Q |
298 |
catgacataacaagaagaagcgcgtcatgtgtgaatgcaatcaaacgtgatcaattatttattttgttagctg-------gcgtgtccataacattaaag |
390 |
Q |
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| T |
52664236 |
catgacataacaagaagaagcgcgtcatgtgtgaatgcaatcaaacgtgatcaattgtttattttgttagctgttgacgtgcgtgtccataacattaaag |
52664335 |
T |
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| Q |
391 |
aggtgacaagtataaatcaataaattatatttttaattgatttctgtt-nnnnnnnnnnnnnnnnctccaaataaacattggtagggttcttcttcctat |
489 |
Q |
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| T |
52664336 |
aggtgacaagtataaatcaataaattatatttttaattgatttctgttaaaaataaaaataaaaactccaaataaacattgctagggttcttcttcctat |
52664435 |
T |
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| Q |
490 |
tattcatccttatcttcatcaaattaaaaat |
520 |
Q |
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| T |
52664436 |
tattcatccttatcttcatcaaattaaaaat |
52664466 |
T |
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