View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_low_19 (Length: 512)

Name: NF1643_low_19
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_low_19
NF1643_low_19
[»] chr1 (6 HSPs)
chr1 (281-512)||(34406852-34407101)
chr1 (22-227)||(34407195-34407378)
chr1 (239-362)||(34709844-34709967)
chr1 (231-419)||(34713506-34713697)
chr1 (279-348)||(34709767-34709836)
chr1 (425-464)||(34713721-34713760)
[»] chr4 (2 HSPs)
chr4 (20-193)||(861969-862142)
chr4 (68-191)||(47651165-47651288)
[»] chr3 (3 HSPs)
chr3 (20-189)||(37043380-37043550)
chr3 (20-143)||(20614794-20614917)
chr3 (28-140)||(7938456-7938569)
[»] chr5 (2 HSPs)
chr5 (28-189)||(5013606-5013767)
chr5 (28-139)||(24255114-24255225)
[»] chr6 (2 HSPs)
chr6 (22-189)||(16317605-16317773)
chr6 (38-149)||(2694536-2694649)
[»] chr2 (1 HSPs)
chr2 (19-103)||(37535205-37535289)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 281 - 512
Target Start/End: Complemental strand, 34407101 - 34406852
Alignment:
Q  281 tgagaataactttctaacaatgtgtcaggaatcacgatcaaaagtcatccaccacgcgatccacctctgacaagcagagtttggtgttccccatacacta 380  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||||||    
T  34407101 tgagaataactttctcacaatgtgtgaggaatcacgatcaaaagtcatccaccacacgatccatctctggcaagcagagtttggtgttccccagacacta 34407002  T
Q  381 ttatcacgaaaaatagacttttcaaacacaaagtaaagtaaata------------------ttaaaagttaagtggaattgtatgagaataaatttcat 462  Q
    | |||||||||||||||||||||||||||||||||||||| |||                  ||||||||||||||||||||||||||||||||||||||    
T  34407001 tcatcacgaaaaatagacttttcaaacacaaagtaaagtatatatcatgttttacaaccatcttaaaagttaagtggaattgtatgagaataaatttcat 34406902  T
Q  463 atttcgtgtttnnnnnnnttattaattagtttacttttatatctataaat 512  Q
    ||||||| |||       ||||||||||||||||||||||||||||||||    
T  34406901 atttcgtttttgaaaaaattattaattagtttacttttatatctataaat 34406852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 34407378 - 34407195
Alignment:
Q  22 gaatccatcaagaatgaaaataagccaataaaaagcagttgtgagaggaaatcatgggaggtggggagaaaaagatgaaaatcataaactagtggatggg 121  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||                      |||||||||||||||    
T  34407378 gaatccatcaagaatgaaaataagccaataaaaagcagctgtgagaggaaatcatgggaggtg----------------------aaactagtggatggg 34407301  T
Q  122 tggcatacaagtcacatgtgtcttgaaattctcgggataattctatttcgcttgaaataacatttttcttttataatagacacgtctttgattagaacat 221  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34407300 tggcatacaagccacatgtgtcttgaaattctcgggataattttatttcgcttgaaataacatttttcttttataatagacacgtctttgattagaacat 34407201  T

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Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 34709844 - 34709967
Alignment:
Q  239 gtagtttcgtgttcaccatgcactgtcatcacgaaaaatatttgagaataactttctaacaatgtgtcaggaatcacgatcaaaagtcatccaccacgcg 338  Q
    ||||||||||||||||||  || ||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| |||| |||| ||||||| |    
T  34709844 gtagtttcgtgttcaccacacattgtcatcacgaaaaacatttgagaataactttctaacaatgtgtcggaaatcacgattaaaactcatacaccacgtg 34709943  T
Q  339 atccacctctgacaagcagagttt 362  Q
    ||||||||||| ||||| ||||||    
T  34709944 atccacctctggcaagcggagttt 34709967  T

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Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 231 - 419
Target Start/End: Original strand, 34713506 - 34713697
Alignment:
Q  231 tggcaggcgtagtttcgtgttcaccatgcactgtcatcacgaaaaatatttgagaataactttctaacaatgtgtcaggaatcacgatcaaaagtcatcc 330  Q
    |||||| ||| ||||||||| ||||| | ||| |||||| |||||| |||||||| ||||||||||||| |||||| ||||||||||| ||||||||| |    
T  34713506 tggcagacgtggtttcgtgtacaccacgtactctcatcatgaaaaacatttgagagtaactttctaacattgtgtcgggaatcacgattaaaagtcatac 34713605  T
Q  331 accacgcgatccacctctgacaagcagagtttg--gtgttccccatacactattatcacgaaaaa-tagacttttcaaacacaaagtaaagt 419  Q
    |||| |||||||||||| | ||| ||||||||   ||||||  ||  |||||| ||||||||||| || ||||||| ||| |||||||||||    
T  34713606 accatgcgatccacctcaggcaaacagagttttttgtgttcatcacgcactataatcacgaaaaaataaacttttcgaacgcaaagtaaagt 34713697  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 348
Target Start/End: Original strand, 34709767 - 34709836
Alignment:
Q  279 tttgagaataactttctaacaatgtgtcaggaatcacgatcaaaagtcatccaccacgcgatccacctct 348  Q
    ||||||| ||||||||||||| ||| |||||||| |||||  |||| ||||||||||| |||||||||||    
T  34709767 tttgagagtaactttctaacagtgtatcaggaattacgattgaaagccatccaccacgtgatccacctct 34709836  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 464
Target Start/End: Original strand, 34713721 - 34713760
Alignment:
Q  425 ttaaaagttaagtggaattgtatgagaataaatttcatat 464  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  34713721 ttaaaagttatatggaattgtatgagaataaatttcatat 34713760  T

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Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 861969 - 862142
Alignment:
Q  20 ccgaatccatcaagaatgaaaataagccaataaaaagcagttgtgagaggaaatcatgggaggtggggagaaaaagatgaaaatcataaactagtggatg 119  Q
    ||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  861969 ccgaatcaatcaagaatgaaaacaagccaataaaaagcagctgtgagcggaaatcatgggaggtggggagaaaaagatggaaatcataaactagtggatg 862068  T
Q  120 ggtggcatacaagtcacatgtgtcttgaaattctcgggataattctatttcgcttgaaataacatttttctttt 193  Q
     ||| |||||| | |||||||| | |||||| ||||||||| | ||||||||||||||||| |||||| |||||    
T  862069 agtgacatacatgccacatgtgccgtgaaatactcgggatagtgctatttcgcttgaaatagcattttcctttt 862142  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 68 - 191
Target Start/End: Original strand, 47651165 - 47651288
Alignment:
Q  68 ggaaatcatgggaggtggggagaaaaagatgaaaatcataaactagtggatgggtggcatacaagtcacatgtgtcttgaaattctcgggataattctat 167  Q
    |||||||||||||||  ||||||||||||||||||||||||| |||||||||| || |||||| | |||||||||| |||||   ||| |||| | ||||    
T  47651165 ggaaatcatgggaggaagggagaaaaagatgaaaatcataaaatagtggatggatgacatacatgccacatgtgtcgtgaaaaattcgagatattactat 47651264  T
Q  168 ttcgcttgaaataacatttttctt 191  Q
    ||| ||| ||||| ||||||||||    
T  47651265 ttcactttaaatatcatttttctt 47651288  T

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Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 37043380 - 37043550
Alignment:
Q  20 ccgaatccatcaagaatgaaaataagccaataaaaagcagttgtgagaggaaatcatgggaggtgggg-agaaaaagatgaaaatcataaactagtggat 118  Q
    |||||| |||||||||||||||||||||||| |||| ||| ||| || |||||||||||||||||||| ||||||||||| ||||||||||||| |||||    
T  37043380 ccgaatgcatcaagaatgaaaataagccaattaaaaacagctgttagtggaaatcatgggaggtgggggagaaaaagatggaaatcataaactaatggat 37043479  T
Q  119 gggtggcatacaagtcacatgtgtcttgaaattctcgggataattctatttcgcttgaaataacatttttc 189  Q
    || ||||||||| | ||||||||||| |||| |||||||| | || |||||||  ||||||| ||||||||    
T  37043480 ggatggcatacatgccacatgtgtctggaaaatctcgggacagttttatttcgtgtgaaatagcatttttc 37043550  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 20614794 - 20614917
Alignment:
Q  20 ccgaatccatcaagaatgaaaataagccaataaaaagcagttgtgagaggaaatcatgggaggtggggagaaaaagatgaaaatcataaactagtggatg 119  Q
    ||||||| ||||||||| |||| ||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20614794 ccgaatctatcaagaataaaaacaagtcaataaaaagcagatgtgagcggaaatcatgggaggtggggagaaaaagatggaaatcataaactagtggatg 20614893  T
Q  120 ggtggcatacaagtcacatgtgtc 143  Q
    ||||  ||||| | ||||||||||    
T  20614894 ggtgaaatacatgccacatgtgtc 20614917  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 7938569 - 7938456
Alignment:
Q  28 atcaagaatgaaaataagccaataaaaagcagttgtgagaggaaatcatgggaggtggggagaaaaagat-gaaaatcataaactagtggatgggtggca 126  Q
    |||||||||||| | |||||||| |||| ||| | |||| ||| |||  ||||||| |||||||||| || ||||||| |||| ||||||||| ||||||    
T  7938569 atcaagaatgaatacaagccaatcaaaatcagctttgagcggatatcgggggaggttgggagaaaaatatggaaaatcctaaaatagtggatgagtggca 7938470  T
Q  127 tacaagtcacatgt 140  Q
    |||| | |||||||    
T  7938469 tacatgccacatgt 7938456  T

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Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 5013606 - 5013767
Alignment:
Q  28 atcaagaatgaaaataagccaataaaaagcagttgtgagaggaaatcatgggaggtggggagaaaaagatgaaaatcataaactagtggatgggtggcat 127  Q
    |||| ||||||||| ||||||||| ||||||||| |||| |||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||    
T  5013606 atcacgaatgaaaacaagccaatagaaagcagttttgagcggaaatcatgggaggtggggagaaaaaggtggaaatcatagactagtggatgagtggcat 5013705  T
Q  128 acaagtcacatgtgtcttgaaattctcgggataattctatttcgcttgaaataacatttttc 189  Q
    ||| | |||||||||  ||||||  | |||||| |  |||||||||| ||||| ||||||||    
T  5013706 acatgccacatgtgtggtgaaatatttgggatagtgttatttcgctttaaatagcatttttc 5013767  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 24255114 - 24255225
Alignment:
Q  28 atcaagaatgaaaataagccaataaaaagcagttgtgagaggaaatcatgggaggtggggagaaaaagatgaaaatcataaactagtggatgggtggcat 127  Q
    |||| ||||||||| |||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||| | |||||||    
T  24255114 atcacgaatgaaaacaagccaataaaaagtagttttgagaggaaatcatgggaggtggagagaaaaagatggaaatcataaactagtggacgagtggcat 24255213  T
Q  128 acaagtcacatg 139  Q
    ||| | ||||||    
T  24255214 acatgccacatg 24255225  T

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Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 16317605 - 16317773
Alignment:
Q  22 gaatccatcaagaatgaaaataagccaataaaaagcagttgtgagaggaaatcatgggaggtgggg-agaaaaagatgaaaatcataaactagtggatgg 120  Q
    |||| |||||||||||||||||| ||||| |||| ||| ||| || |||||||||||||||||||| ||| ||||||| ||||||||| ||| |||||||    
T  16317605 gaatgcatcaagaatgaaaataaaccaattaaaaacagctgtcagcggaaatcatgggaggtgggggagagaaagatggaaatcataatctaatggatgg 16317704  T
Q  121 gtggcatacaagtcacatgtgtcttgaaattctcgggataattctatttcgcttgaaataacatttttc 189  Q
     ||||||||| | ||||||||||| |||| |||| ||| | || |||||||  ||||||||||||||||    
T  16317705 atggcatacatgccacatgtgtctggaaaatctcaggacagttttatttcgtgtgaaataacatttttc 16317773  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 149
Target Start/End: Original strand, 2694536 - 2694649
Alignment:
Q  38 aaaataagccaataaaaagcagttgt-gagaggaaatcatgggaggtgggg-agaaaaagatgaaaatcataaactagtggatgggtggcatacaagtca 135  Q
    |||||| |||||||||||||| || | ||  |||||||||||||||||||| |||||| |||| ||||||||||   |||||||||||||||||| | ||    
T  2694536 aaaataggccaataaaaagcaatttttgaacggaaatcatgggaggtgggggagaaaatgatggaaatcataaaactgtggatgggtggcatacatgcca 2694635  T
Q  136 catgtgtcttgaaa 149  Q
    ||||||||||||||    
T  2694636 catgtgtcttgaaa 2694649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 37535205 - 37535289
Alignment:
Q  19 accgaatccatcaagaatgaaaataagccaataaaaagcagttgtgagaggaaatcatgggaggtggggagaaaaagatgaaaat 103  Q
    ||||||||||||||||||||||| |||||||| |||| ||  ||| || |||||| |||| | ||| ||||||||| ||| ||||    
T  37535205 accgaatccatcaagaatgaaaacaagccaatcaaaaacatctgttagcggaaattatggaaagtgaggagaaaaatatggaaat 37535289  T

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