View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_2 (Length: 843)
Name: NF1643_low_2
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 352 - 796
Target Start/End: Original strand, 8350063 - 8350507
Alignment:
| Q |
352 |
cttagctacccactccactacaaataactaatgactaggatacaatattgctgtctagctggaggttcattagattaaaacacaacattacaacaatcat |
451 |
Q |
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| T |
8350063 |
cttagctacccactccactacaaataactaatgactatgatacaatattgctgtctagctggaggttcattagattaaaacacaacattacaacaatcat |
8350162 |
T |
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| Q |
452 |
atgaacctaaggttgtttaacatatattgtcggccatggttgaccaataggcgagaaactgattggaccttaaagcaattcgatgttcaaattctatagc |
551 |
Q |
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| T |
8350163 |
atgaacctaaggttgtttaacatatattgtcggccatggttgaccaataggcgagaaactgattggaccttaaagcaattcgatgttcaaattctatagc |
8350262 |
T |
|
| Q |
552 |
acatgccacatgtctaagttatctttatgattcaataatgagcatgtagtgttattttagtgcacgtagttctctatataaagagacattacaaccaaga |
651 |
Q |
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| T |
8350263 |
acatgccacatgtctaagttatctttatgattcaataatgagcatgtagtgttattttagtgtacgtagttctctatataaagagacattacaaccaaga |
8350362 |
T |
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| Q |
652 |
acgtcaagcaaagtaagttgtctaaaatcagtatgggtgctagtactgctgctaatgcaaagtatttgtctttaatattacttgtgttttgtactcttat |
751 |
Q |
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| T |
8350363 |
acgtcaagcaaagtaagttgtctaaaatcattatgggtgctagtactgctgctaatgcaaagtatttccacttagcattgcttgtgtttagtactctttg |
8350462 |
T |
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| Q |
752 |
tgcttttattaatggtatttgtcatgagaggaatattggtggtag |
796 |
Q |
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| T |
8350463 |
tgtttttatgaatggtatttgtcatgggaggaatataggtggtag |
8350507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 8349712 - 8350007
Alignment:
| Q |
1 |
ctttaacttgtttgctcaaagtgggtaatccttgtttataaaaaatataataatttaaagatgaaaatttgggagtgccttggaagtgggggatatgttt |
100 |
Q |
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| T |
8349712 |
ctttaacttgtttgctcaaagtgggtaatccttgtttataaaaaaaataataatttaaagatgaaaatttgggagtgccttggaagtgggggatatgttt |
8349811 |
T |
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| Q |
101 |
gtaattttataggcgtacacttcaagtgtctaagccattatcaaaccaaacattgctctatgccaaaaagaacaagtatattggtcacatggtatccaca |
200 |
Q |
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| T |
8349812 |
gtaattttataggcgtacacttcaagtgtctaagccattatcaaaccaaacattgctctatgccaaaaagaacaagtatattggtcacatggtatccaca |
8349911 |
T |
|
| Q |
201 |
ttgctgctcttgctttaatttttctcaagtgcgaacagttaattaagaaaccccattattgttttttacacattgaaaaaatttagaaaccaattg |
296 |
Q |
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| T |
8349912 |
ttgctgctcttgctttaatttttctcaagtgcgaacagttaattaagaaaccccattattgttttttacacattgaaaaaatttagaaaccaattg |
8350007 |
T |
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