View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_20 (Length: 504)
Name: NF1643_low_20
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 36735560 - 36736031
Alignment:
| Q |
1 |
cctttcaagggctcatcctttaatttgtgtccctgtgcctagatttaatccttttccttctatgtgatcttgatcatgtt-aggggaggnnnnnnnntgc |
99 |
Q |
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| T |
36735560 |
cctttcaagggctcatcctttaatttgtgtccctgtgcctagatttaatcattttccttctatgtgattttgatcatgtttaggggaggaaaaaaaatgc |
36735659 |
T |
|
| Q |
100 |
aacttcatattgaaaatttatatttttagtcctcttgttgctttgtggtattcataaatcataactatcattttctttgtgatattcatgctttgcataa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36735660 |
aacttcatattgaaaatttatatttttagtcctcttgttgctttgtggtattcataaatcataactatcattttctttgtgatattcatgctttgcataa |
36735759 |
T |
|
| Q |
200 |
ccaataactatcaatgtactatatgggtaaataaaaatacagtcacgtaaccaaacaagcaatgatcaacgctcctgaaaagttaaaaacattcacaatg |
299 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36735760 |
ccaataactatcaatgtaccatatgagtaaataaaaatacagtcacataaccaaacaagcaatgatcaccgctcctgaaaagttaaaaacattcacaatg |
36735859 |
T |
|
| Q |
300 |
aaacacttacttgaatatctataaaatcgtagttcacttgaataatttaaataagtttttaattcttataaatatatta---aattttgcattattccac |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
36735860 |
aaacacttacttgaatatctataaaatcgtagttcacttgaataatttaaataagtttttaatttttataaatatattaaataattttgcattattccac |
36735959 |
T |
|
| Q |
397 |
at--nnnnnnnngtgaaatgttttagtcactatgaaaagttttaacattagtattagaccatgttaaattga |
466 |
Q |
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|| |||| |||||||||||||||| |||||||||||||||||| |||| |||||||||||||| |
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| T |
36735960 |
attaaaaaaaaagtgacatgttttagtcactataaaaagttttaacattagttttagtccatgttaaattga |
36736031 |
T |
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