View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_3 (Length: 801)
Name: NF1643_low_3
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 679; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 17 - 783
Target Start/End: Complemental strand, 4287009 - 4286246
Alignment:
| Q |
17 |
atatgtttgctctaatgtttgtaactgaagcttcttaaaatatatatactttcttcatgctttcatcaatcatgttttaagaaaatgtgtttactagttc |
116 |
Q |
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||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4287009 |
atatgtttgctctaaagtttgtaattgaagcttcttataatatatatactttcttcatgctttcatcaatcatgttttaagaaaatgtgtttactagttc |
4286910 |
T |
|
| Q |
117 |
taatattgatagcgtgctttcattcctaagcataaaaagaaacattgattatcttgactaaataaaacaatctaatcttgaatgaaaacctgtgtgttat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4286909 |
taatattgatagcgtgctttcattcctaagcataaaaagaaacattgattatcttgactaaataaaacaatctaatcttgaatgaaaacctgtgtgttat |
4286810 |
T |
|
| Q |
217 |
tattgtttcctcctctcaaaattctgttcatacattactggggagtagttaccaagtgctagtttattgcatgtagtcaaatttatgattttttgatgtt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4286809 |
tattgtttcctcctctcaaaattctgttcatacattactggggagtagttgccaagtgctagtttattgcatgtagtcaaatttatgatttttttatgtt |
4286710 |
T |
|
| Q |
317 |
tcgaattgacgtagaattcagtttgtttggatcaactccttctcaagtgctttggggtggactgatgaattaattgtatgtcatgatcaaacaggtggtc |
416 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4286709 |
tcaaattgacgtagaattcagtttgtttggatcaactccttctcaagtgctttggggtggactgatg----aattgtatgtcatgatcaaacaggtggtc |
4286614 |
T |
|
| Q |
417 |
ataaataaatgttgctgtttattaaaccagttttatgttttgagaccttttatatagcaatgcatgaacattgttcttgtgacacaccaagtaggcaagt |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4286613 |
ataaataaatgttgctgtttattaaaccagttttatgttttgagaccttttatatagcaatgcatgaacattgttcttgtgacacaccaagtaggcaagt |
4286514 |
T |
|
| Q |
517 |
agatttcttagataatatcagtcttatgtccttggttcaatcttcaatataataacttggtggtgagtgattgtaacttatgtatttgcttgcagatgag |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4286513 |
agatttcttagataatatcagtcttatgtctttggttcaatcttcaatataataacttggtggtgagtgattgtaacttatgtatttgcttgcagatgag |
4286414 |
T |
|
| Q |
617 |
acctctatcgaacttgtagaacatggtactgttatgcccagtgaaaattgaacagacctctacttttatgtga-nnnnnnnngctaaggttatgccatga |
715 |
Q |
| |
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| T |
4286413 |
acctctatcgaactagtagaacatggtactgttatgcccggtgaaaattgaacagacctctacgtttatgtgattcttttttgctaaggttatgccatga |
4286314 |
T |
|
| Q |
716 |
tgggccaagggaatgataacagagtcttgtcttaaatgaagagttagcttacttaattatcctcaagt |
783 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4286313 |
tgggccaagggaatgataacagagtcttgtcttaaatgaagagttagcttacttaattatcctcaagt |
4286246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 19972224 - 19972170
Alignment:
| Q |
108 |
tactagttctaatattgatagcgtgctttcattcctaagcataaaaagaaacatt |
162 |
Q |
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|||||| ||||||||||||||| | |||||||| ||||||||||||||||||| |
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| T |
19972224 |
tactagctctaatattgatagcatcacttcattcccaagcataaaaagaaacatt |
19972170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 19972306 - 19972245
Alignment:
| Q |
61 |
tatactttcttcatgctttcatcaatcatgttttaagaaaatgtgtttactagttctaatat |
122 |
Q |
| |
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|||| |||||||||||||| ||||| |||||||| |||||| | |||||||| |||||||| |
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| T |
19972306 |
tataatttcttcatgctttgatcaaccatgttttgagaaaacgcatttactagctctaatat |
19972245 |
T |
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