View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_30 (Length: 430)
Name: NF1643_low_30
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 40606868 - 40606669
Alignment:
| Q |
17 |
aaaatcaaaccataaacaagtaccagataaccgtaaattaaaatat---nnnnnnnnnntcagtttatttgggcaagagtcacaattaaaaagatggagn |
113 |
Q |
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| T |
40606868 |
aaaatcaaaccataaacaa-taccagataaccgtatattaaaatataaaaaaaaaaaaaacagtttatttgggcaagagtcacaatt-aaaagatggaga |
40606771 |
T |
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| Q |
114 |
nnnnnnggattgatctaaggaaacataaaaatatcagccacattacacagtgccttctactgcaacaagtgcacttaacgaaacataacaatggttacta |
213 |
Q |
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| T |
40606770 |
aaaaaaggattgatatgaggaaacataaaaataccagccacattacacagtgccttctactgcaacaagtgcacttaacgaaacataacaatggttacta |
40606671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 385
Target Start/End: Original strand, 10623510 - 10623554
Alignment:
| Q |
341 |
acagtaattggtagttgttgttgtccttgttgggagattttttgt |
385 |
Q |
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| T |
10623510 |
acagtaattggtagttgttgttgtccttgttgggagattttttgt |
10623554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 419
Target Start/End: Original strand, 21083478 - 21083512
Alignment:
| Q |
385 |
ttgctcttttgattttccccatacaactaagtata |
419 |
Q |
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| T |
21083478 |
ttgctcttttgattttccccatacaactaggtata |
21083512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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