View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_low_33 (Length: 426)

Name: NF1643_low_33
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_low_33
NF1643_low_33
[»] chr3 (11 HSPs)
chr3 (15-409)||(33615801-33616193)
chr3 (199-409)||(33608199-33608409)
chr3 (196-409)||(33626477-33626690)
chr3 (200-379)||(33587423-33587602)
chr3 (200-379)||(33594595-33594774)
chr3 (200-379)||(33601726-33601905)
chr3 (196-409)||(33621356-33621569)
chr3 (21-89)||(33626302-33626370)
chr3 (288-352)||(33562047-33562111)
chr3 (196-247)||(33561955-33562006)
chr3 (19-74)||(33608006-33608061)


Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 15 - 409
Target Start/End: Original strand, 33615801 - 33616193
Alignment:
Q  15 actctcaatcatcattacctgcatagttgctgcatccggtggccttctttatggatatgatctcggagtttcaggnnnnnnncttcttctgcgtttattc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  33615801 actctcaatcatcattacctgcatagttgctgcatccggtggccttctttatggatatgatctcggagtttcaggttttttttttcttctgcgtttattc 33615900  T
Q  115 cataaatttttcagtctatctatcaaatttaaaagattatttatatctaatttcacannnnnnnnnncttttcaatttattaaatttcaggaggtgttac 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||    
T  33615901 cataaatttttcagtctatctatcaaatttaaaagattatttatatctaatttcacatattttttt--ttttcaatttattaaatttcaggaggtgttac 33615998  T
Q  215 aacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtgtatgatagtcaaatattg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33615999 aacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtgtatgatagtcaaatattg 33616098  T
Q  315 acactatttacgtcttctctttatctagctggattagtgtcatccattgcagctagcaaagtcacggcggcttatggtcggagaaacgtcatcat 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33616099 acactatttacgtcttctctttatctagctggattagtgtcatccattgcagctagcaaagtcacggcggcttatggtcggagaaacgtcatcat 33616193  T

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Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 199 - 409
Target Start/End: Original strand, 33608199 - 33608409
Alignment:
Q  199 tttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtgta 298  Q
    ||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||| || ||||||||  |||| |||||||||||||||||||||||    
T  33608199 tttcaggaggtgtcacaacgatggtgccgtttcttcaaaaattctttccagatattctaaggaaggcagctggtgctgaagtgaatatgtattgtgtgta 33608298  T
Q  299 tgatagtcaaatattgacactatttacgtcttctctttatctagctggattagtgtcatccattgcagctagcaaagtcacggcggcttatggtcggaga 398  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||   |||||||| |||    
T  33608299 tgatagtcaaacattgacattatttacgtcttctctttatctagctggattagtgtcatcccttgcagctagcaaagttaccgcgtggtatggtcgaaga 33608398  T
Q  399 aacgtcatcat 409  Q
    |||||||||||    
T  33608399 aacgtcatcat 33608409  T

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Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 196 - 409
Target Start/End: Original strand, 33626477 - 33626690
Alignment:
Q  196 aaatttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgt 295  Q
    |||||||||||||||| ||||| |||  |||||||||  |||||||||| ||||||||||| ||||||||||   || |  | ||||| ||||| |||||    
T  33626477 aaatttcaggaggtgtcacaactatgaagccatttcttaaaaaattcttcccagacattctaagaaaggcagttggtactaaggtgaacatgtactgtgt 33626576  T
Q  296 gtatgatagtcaaatattgacactatttacgtcttctctttatctagctggattagtgtcatccattgcagctagcaaagtcacggcggcttatggtcgg 395  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||  |||| ||  ||| |||||||||||  ||  ||   | |||||||    
T  33626577 gtatgatagtcaaatattgacattattcacgtcttctctttatctagctggatttatgtcgtcacttgtagctagcaaagctacaacgatgtttggtcgg 33626676  T
Q  396 agaaacgtcatcat 409  Q
    ||||||||||||||    
T  33626677 agaaacgtcatcat 33626690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 200 - 379
Target Start/End: Original strand, 33587423 - 33587602
Alignment:
Q  200 ttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtgtat 299  Q
    |||||||||||||||||| ||||||||||||||| | |||||||| ||||| ||||| |||||||||||  || | ||||| |||||||| |||||||||    
T  33587423 ttcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtat 33587522  T
Q  300 gatagtcaaatattgacactatttacgtcttctctttatctagctggattagtgtcatccattgcagctagcaaagtcac 379  Q
    || ||||| || |||||  | |||||||| ||||| ||||||||||| ||||||||| |  ||| |||||||||||||||    
T  33587523 gacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtcaactcttgtagctagcaaagtcac 33587602  T

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Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 200 - 379
Target Start/End: Original strand, 33594595 - 33594774
Alignment:
Q  200 ttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtgtat 299  Q
    |||||||||||||||||| ||||||||||||||| | |||||||| ||||| ||||| |||||||||||  || | ||||| |||||||| |||||||||    
T  33594595 ttcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtat 33594694  T
Q  300 gatagtcaaatattgacactatttacgtcttctctttatctagctggattagtgtcatccattgcagctagcaaagtcac 379  Q
    || ||||| || |||||  | |||||||| ||||| ||||||||||| ||||||||| |  ||| |||||||||||||||    
T  33594695 gacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtcaactcttgtagctagcaaagtcac 33594774  T

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Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 200 - 379
Target Start/End: Original strand, 33601726 - 33601905
Alignment:
Q  200 ttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtgtat 299  Q
    |||||||||||||||||| ||||||||||||||| | |||||||| ||||| ||||| |||||||||||  || | ||||| |||||||| |||||||||    
T  33601726 ttcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtat 33601825  T
Q  300 gatagtcaaatattgacactatttacgtcttctctttatctagctggattagtgtcatccattgcagctagcaaagtcac 379  Q
    || ||||| || |||||  | |||||||| ||||| ||||||||||| ||||||||| |  ||| |||||||||||||||    
T  33601826 gacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtcaactcttgtagctagcaaagtcac 33601905  T

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Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 196 - 409
Target Start/End: Original strand, 33621356 - 33621569
Alignment:
Q  196 aaatttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgt 295  Q
    ||||||||| |||||| || || |||  |||||||||  ||||||| || ||| ||||||| ||||| |||||  || |  | ||||| |||||||||||    
T  33621356 aaatttcagaaggtgtcaccaccatgaagccatttcttaaaaaattattcccatacattcttagaaatgcagctggtactaaggtgaacatgtattgtgt 33621455  T
Q  296 gtatgatagtcaaatattgacactatttacgtcttctctttatctagctggattagtgtcatccattgcagctagcaaagtcacggcggcttatggtcgg 395  Q
    |||||||||||||||||||||| |||| || ||||| ||||||||||||||||| ||||| ||  | |  ||||||||||  ||| ||   | |||||||    
T  33621456 gtatgatagtcaaatattgacattattcacatcttcactttatctagctggatttgtgtcgtcactcgtggctagcaaagctacgacgatgtttggtcgg 33621555  T
Q  396 agaaacgtcatcat 409  Q
    ||||||||||||||    
T  33621556 agaaacgtcatcat 33621569  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 33626302 - 33626370
Alignment:
Q  21 aatcatcattacctgcatagttgctgcatccggtggccttctttatggatatgatctcggagtttcagg 89  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||    
T  33626302 aatcatcattacctgcatagttgctgcttccagtggccttctttttggatatgacatcggaatttcagg 33626370  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 352
Target Start/End: Original strand, 33562047 - 33562111
Alignment:
Q  288 tattgtgtgtatgatagtcaaatattgacactatttacgtcttctctttatctagctggattagt 352  Q
    ||||||||||||||||||||||| || ||| |||| ||||| || || ||||||||||| |||||    
T  33562047 tattgtgtgtatgatagtcaaatgttaacattattcacgtcctcactgtatctagctgggttagt 33562111  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 33561955 - 33562006
Alignment:
Q  196 aaatttcaggaggtgttacaacgatggtgccatttctccaaaaattctttcc 247  Q
    ||||||||||||||||||| |||||| ||||||| ||  |||||||||||||    
T  33561955 aaatttcaggaggtgttactacgatgatgccattccttgaaaaattctttcc 33562006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 33608006 - 33608061
Alignment:
Q  19 tcaatcatcattacctgcatagttgctgcatccggtggccttctttatggatatga 74  Q
    |||||||||||||| ||||| |||||||| ||| |||| ||||||| |||||||||    
T  33608006 tcaatcatcattacatgcatcgttgctgcttccagtggtcttctttttggatatga 33608061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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